BioRepo | Biosample

General Information

Title

Inacc No : InaCC B1279, Scientific Name: Stutzerimonas stutzeri

Organism

Stutzerimonas stutzeri

Sample Type

Microbe

Description

External Links

Description	URL
None

Sample Information

Sample Attribute

Sample Name	InaCC B1279
Sample Title	Inacc No : InaCC B1279, Scientific Name: Stutzerimonas stutzeri
Description
Taxonomy ID	316
Bioproject Id
Locus Tag Prefix
Strain	Stutzerimonas stutzeri AAB.3
Isolate
Isolation Source	Avicena Alba (stem)
Host
Lab Host
Biomaterial Provider
Sample Type	cell culture
Collection Date	N/A
Geographic Location Name	Indonesia:P. Karimun Anak, Ds. Pongkar, Kec. Tebing, Kab. Karimun, Kep. Riau
Latitude Longitude
Environmental Biome
Depth
Altitude
Collected By
Culture Collection	Indonesian Culture Collection (InaCC) B1279
Genotype
Host Tissue Sampled
Identified By
Mating Type
Passage History
Sample Size
Serotype
Serovar
Specimen Voucher
Temperature	30
Organism	249
Growth Media	Nutrient Agar (NA)

Center

Direktorat Pengelolaan Laboratorium, Fasilitas Riset, dan Kawasan Sains dan Teknologi

Lab

Pusat Sekuensing

Submitter

Lab Pusat Sekuensing - BRIN

Submitted at

30-09-2024

Published at

01-10-2024

Other Information

Culture medium:
- 0:
  - @ref: 22023
  - Name: MINERAL MEDIUM (NAGEL AND ANDREESEN) (DSMZ Medium 461)
  - Growth: yes
  - Link: https://mediadive.dsmz.de/medium/461
  - Composition: Name: MINERAL MEDIUM (NAGEL AND ANDREESEN) (DSMZ Medium 461; with strain-specific modifications) Composition: Na2HPO4 x 2 H2O 1.44135 g/l KNO3 1.0 g/l MgSO4 x 7 H2O 0.497018 g/l NH4Cl 0.298211 g/l KH2PO4 0.248509 g/l NaCl 0.0497018 g/l MnSO4 0.00994036 g/l CaCl2 0.00994036 g/l HCl 0.00248509 g/l FeCl2 x 4 H2O 0.00149105 g/l p-Aminobenzoic acid 0.000248509 g/l Thiamine-HCl x 2 H2O 0.000248509 g/l alpha-lipoic acid 0.000248509 g/l Vitamin B12 0.000248509 g/l Pantothenic acid 0.000248509 g/l Riboflavin 0.000248509 g/l CoCl2 x 6 H2O 0.000188867 g/l Nicotine amide 0.000124254 g/l Nicotinic acid 0.000124254 g/l Folic acid 9.94036e-05 g/l Biotin 9.94036e-05 g/l MnCl2 x 4 H2O 9.94036e-05 g/l ZnCl2 6.95825e-05 g/l Pyridoxamine hydrochloride 4.97018e-05 g/l Na2MoO4 x 2 H2O 3.57853e-05 g/l NiCl2 x 6 H2O 2.38569e-05 g/l H3BO3 5.96421e-06 g/l CuCl2 x 2 H2O 1.98807e-06 g/l Distilled water
- 1:
  - @ref: 22023
  - Name: NUTRIENT AGAR (DSMZ Medium 1)
  - Growth: yes
  - Link: https://mediadive.dsmz.de/medium/1
  - Composition: Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
Culture temp:
- @ref: 22023
- Growth: positive
- Type: growth
- Temperature: 28

Metabolite utilization:
- 0:
  - @ref: 68369
  - Chebi-ID: 25115
  - Metabolite: malate
  - Utilization activity: +
  - Kind of utilization tested: assimilation
- 1:
  - @ref: 68369
  - Chebi-ID: 17128
  - Metabolite: adipate
  - Utilization activity: -
  - Kind of utilization tested: assimilation
- 2:
  - @ref: 68369
  - Chebi-ID: 27689
  - Metabolite: decanoate
  - Utilization activity: +
  - Kind of utilization tested: assimilation
- 3:
  - @ref: 68369
  - Chebi-ID: 24265
  - Metabolite: gluconate
  - Utilization activity: +
  - Kind of utilization tested: assimilation
- 4:
  - @ref: 68369
  - Chebi-ID: 17306
  - Metabolite: maltose
  - Utilization activity: +
  - Kind of utilization tested: assimilation
- 5:
  - @ref: 68369
  - Chebi-ID: 59640
  - Metabolite: N-acetylglucosamine
  - Utilization activity: -
  - Kind of utilization tested: assimilation
- 6:
  - @ref: 68369
  - Chebi-ID: 16899
  - Metabolite: D-mannitol
  - Utilization activity: -
  - Kind of utilization tested: assimilation
- 7:
  - @ref: 68369
  - Chebi-ID: 16024
  - Metabolite: D-mannose
  - Utilization activity: -
  - Kind of utilization tested: assimilation
- 8:
  - @ref: 68369
  - Chebi-ID: 30849
  - Metabolite: L-arabinose
  - Utilization activity: -
  - Kind of utilization tested: assimilation
- 9:
  - @ref: 68369
  - Chebi-ID: 17634
  - Metabolite: D-glucose
  - Utilization activity: +
  - Kind of utilization tested: assimilation
- 10:
  - @ref: 68369
  - Chebi-ID: 5291
  - Metabolite: gelatin
  - Utilization activity: -
  - Kind of utilization tested: hydrolysis
- 11:
  - @ref: 68369
  - Chebi-ID: 4853
  - Metabolite: esculin
  - Utilization activity: +
  - Kind of utilization tested: hydrolysis
- 12:
  - @ref: 68369
  - Chebi-ID: 16199
  - Metabolite: urea
  - Utilization activity: -
  - Kind of utilization tested: hydrolysis
- 13:
  - @ref: 68369
  - Chebi-ID: 29016
  - Metabolite: arginine
  - Utilization activity: -
  - Kind of utilization tested: hydrolysis
- 14:
  - @ref: 68369
  - Chebi-ID: 17634
  - Metabolite: D-glucose
  - Utilization activity: -
  - Kind of utilization tested: fermentation
- 15:
  - @ref: 68369
  - Chebi-ID: 27897
  - Metabolite: tryptophan
  - Utilization activity: -
  - Kind of utilization tested: energy source
- 16:
  - @ref: 68369
  - Chebi-ID: 17632
  - Metabolite: nitrate
  - Utilization activity: +
  - Kind of utilization tested: reduction
Metabolite production:
- @ref: 68369
- Chebi-ID: 35581
- Metabolite: indole
- Production: no
Metabolite tests:
- @ref: 68369
- Chebi-ID: 35581
- Metabolite: indole
- Indole test: -
Enzymes:
- 0:
  - @ref: 68369
  - Value: cytochrome oxidase
  - Activity: +
  - Ec: 1.9.3.1
- 1:
  - @ref: 68369
  - Value: gelatinase
  - Activity: -
- 2:
  - @ref: 68369
  - Value: beta-glucosidase
  - Activity: +
  - Ec: 3.2.1.21
- 3:
  - @ref: 68369
  - Value: urease
  - Activity: -
  - Ec: 3.5.1.5
- 4:
  - @ref: 68369
  - Value: arginine dihydrolase
  - Activity: -
  - Ec: 3.5.3.6
API 20NE:
- @ref: 22023
- NO3: +
- TRP: -
- GLU Ferm: -
- ADH Arg: -
- URE: -
- ESC: +
- GEL: -
- PNPG: -
- GLU Assim: +
- ARA: -
- MNE: -
- MAN: -
- NAG: -
- MAL: +
- GNT: +
- CAP: +
- ADI: -
- MLT: +
- CIT: +
- PAC: -
- OX: +

Isolation:
- @ref: 22023
- Sample type: subsoil (20 m depth) from a site contaminated with chlorinated hydrocarbons
- Country: Netherlands
- Origin.country: NLD
- Continent: Europe
Isolation source categories:
- 0:
  - Cat1: #Engineered
  - Cat2: #Contamination
- 1:
  - Cat1: #Environmental
  - Cat2: #Terrestrial
  - Cat3: #Soil
Taxonmaps:
- @ref: 69479
- File name: preview.99_1195.png
- Url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_23;96_61;97_64;98_944;99_1195&stattab=map
- Last taxonomy: Pseudomonas balearica subclade
- 16S sequence: AF411219
- Sequence Identity: None
- Total samples: 942
- Soil counts: 74
- Aquatic counts: 344
- Animal counts: 506
- Plant counts: 18

Risk assessment:
- @ref: 22023
- Biosafety level: 1
- Biosafety level comment: Risk group (German classification)

16S sequences:
- @ref: 22023
- Description: Pseudomonas stutzeri strain JJ 16S ribosomal RNA gene, partial sequence
- Accession: AF411219
- Length: 1498
- Database: nuccore
- NCBI tax ID: 316

Lineage: cellular organisms; Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Stutzerimonas; Stutzerimonas stutzeri group; Stutzerimonas stutzeri subgroup
LineageEx:
- Taxon:
  - 0:
    - TaxId: 131567
    - ScientificName: cellular organisms
    - Rank: no rank
  - 1:
    - TaxId: 2
    - ScientificName: Bacteria
    - Rank: superkingdom
  - 2:
    - TaxId: 1224
    - ScientificName: Pseudomonadota
    - Rank: phylum
  - 3:
    - TaxId: 1236
    - ScientificName: Gammaproteobacteria
    - Rank: class
  - 4:
    - TaxId: 72274
    - ScientificName: Pseudomonadales
    - Rank: order
  - 5:
    - TaxId: 135621
    - ScientificName: Pseudomonadaceae
    - Rank: family
  - 6:
    - TaxId: 2901164
    - ScientificName: Stutzerimonas
    - Rank: genus
  - 7:
    - TaxId: 136846
    - ScientificName: Stutzerimonas stutzeri group
    - Rank: species group
  - 8:
    - TaxId: 578833
    - ScientificName: Stutzerimonas stutzeri subgroup
    - Rank: species subgroup

General Information

Sample Information

Other Information

Culture and growth conditions

Physiology and metabolism

Isolation, sampling and environmental information

Safety information

Sequence information

Name and taxonomic classification