BioRepo | Biosample

Other Information

Cell morphology:
- @ref: 116324
- Gram stain: negative
- Cell shape: rod-shaped
- Motility: yes
Colony morphology:
- @ref: 6283
- Type of hemolysis: gamma
- Incubation period: 1-2 days
Pigmentation:
- @ref: 116324
- Production: no
- Name: Pyocyanin

Culture medium:
- 0:
  - @ref: 6283
  - Name: CASO AGAR (MERCK 105458) (DSMZ Medium 220)
  - Growth: yes
  - Link: https://mediadive.dsmz.de/medium/220
  - Composition: Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water
- 1:
  - @ref: 33102
  - Name: MEDIUM 72- for trypto casein soja agar
  - Growth: yes
  - Composition: Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
- 2:
  - @ref: 116324
  - Name: CIP Medium 72
  - Growth: yes
  - Link: https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72
Culture temp:
- 0:
  - @ref: 6283
  - Growth: positive
  - Type: growth
  - Temperature: 28
- 1:
  - @ref: 33102
  - Growth: positive
  - Type: growth
  - Temperature: 30
- 2:
  - @ref: 56273
  - Growth: positive
  - Type: growth
  - Temperature: 30
- 3:
  - @ref: 116324
  - Growth: positive
  - Type: growth
  - Temperature: 25-37
- 4:
  - @ref: 116324
  - Growth: no
  - Type: growth
  - Temperature: 5
- 5:
  - @ref: 116324
  - Growth: no
  - Type: growth
  - Temperature: 10
- 6:
  - @ref: 116324
  - Growth: no
  - Type: growth
  - Temperature: 41

Oxygen tolerance:
- 0:
  - @ref: 56273
  - Oxygen tolerance: aerobe
- 1:
  - @ref: 116324
  - Oxygen tolerance: obligate aerobe
Halophily:
- 0:
  - @ref: 116324
  - Salt: NaCl
  - Growth: positive
  - Tested relation: growth
  - Concentration: 0-4 %
- 1:
  - @ref: 116324
  - Salt: NaCl
  - Growth: no
  - Tested relation: growth
  - Concentration: 6 %
- 2:
  - @ref: 116324
  - Salt: NaCl
  - Growth: no
  - Tested relation: growth
  - Concentration: 8 %
- 3:
  - @ref: 116324
  - Salt: NaCl
  - Growth: no
  - Tested relation: growth
  - Concentration: 10 %
Metabolite utilization:
- 0:
  - @ref: 116324
  - Chebi-ID: 16947
  - Metabolite: citrate
  - Utilization activity: +
  - Kind of utilization tested: carbon source
- 1:
  - @ref: 116324
  - Chebi-ID: 4853
  - Metabolite: esculin
  - Utilization activity: +
  - Kind of utilization tested: hydrolysis
- 2:
  - @ref: 116324
  - Chebi-ID: 17632
  - Metabolite: nitrate
  - Utilization activity: +
  - Kind of utilization tested: reduction
- 3:
  - @ref: 116324
  - Chebi-ID: 16301
  - Metabolite: nitrite
  - Utilization activity: -
  - Kind of utilization tested: reduction
- 4:
  - @ref: 116324
  - Chebi-ID: 17632
  - Metabolite: nitrate
  - Utilization activity: -
  - Kind of utilization tested: respiration
- 5:
  - @ref: 68369
  - Chebi-ID: 25115
  - Metabolite: malate
  - Utilization activity: +
  - Kind of utilization tested: assimilation
- 6:
  - @ref: 68369
  - Chebi-ID: 17128
  - Metabolite: adipate
  - Utilization activity: +
  - Kind of utilization tested: assimilation
- 7:
  - @ref: 68369
  - Chebi-ID: 27689
  - Metabolite: decanoate
  - Utilization activity: +
  - Kind of utilization tested: assimilation
- 8:
  - @ref: 68369
  - Chebi-ID: 24265
  - Metabolite: gluconate
  - Utilization activity: +
  - Kind of utilization tested: assimilation
- 9:
  - @ref: 68369
  - Chebi-ID: 17306
  - Metabolite: maltose
  - Utilization activity: -
  - Kind of utilization tested: assimilation
- 10:
  - @ref: 68369
  - Chebi-ID: 59640
  - Metabolite: N-acetylglucosamine
  - Utilization activity: +
  - Kind of utilization tested: assimilation
- 11:
  - @ref: 68369
  - Chebi-ID: 16899
  - Metabolite: D-mannitol
  - Utilization activity: +
  - Kind of utilization tested: assimilation
- 12:
  - @ref: 68369
  - Chebi-ID: 16024
  - Metabolite: D-mannose
  - Utilization activity: +
  - Kind of utilization tested: assimilation
- 13:
  - @ref: 68369
  - Chebi-ID: 30849
  - Metabolite: L-arabinose
  - Utilization activity: +
  - Kind of utilization tested: assimilation
- 14:
  - @ref: 68369
  - Chebi-ID: 17634
  - Metabolite: D-glucose
  - Utilization activity: +
  - Kind of utilization tested: assimilation
- 15:
  - @ref: 68369
  - Chebi-ID: 4853
  - Metabolite: esculin
  - Utilization activity: +
  - Kind of utilization tested: hydrolysis
- 16:
  - @ref: 68369
  - Chebi-ID: 16199
  - Metabolite: urea
  - Utilization activity: -
  - Kind of utilization tested: hydrolysis
- 17:
  - @ref: 68369
  - Chebi-ID: 29016
  - Metabolite: arginine
  - Utilization activity: -
  - Kind of utilization tested: hydrolysis
- 18:
  - @ref: 68369
  - Chebi-ID: 17634
  - Metabolite: D-glucose
  - Utilization activity: -
  - Kind of utilization tested: fermentation
- 19:
  - @ref: 68369
  - Chebi-ID: 27897
  - Metabolite: tryptophan
  - Utilization activity: -
  - Kind of utilization tested: energy source
- 20:
  - @ref: 68369
  - Chebi-ID: 17632
  - Metabolite: nitrate
  - Utilization activity: +
  - Kind of utilization tested: reduction
Antibiotic resistance:
- @ref: 116324
- Metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
- Is antibiotic: yes
- Is sensitive: no
- Is resistant: yes
Metabolite production:
- 0:
  - @ref: 68369
  - Chebi-ID: 35581
  - Metabolite: indole
  - Production: no
- 1:
  - @ref: 116324
  - Chebi-ID: 35581
  - Metabolite: indole
  - Production: no
Metabolite tests:
- @ref: 68369
- Chebi-ID: 35581
- Metabolite: indole
- Indole test: -
Enzymes:
- 0:
  - @ref: 6283
  - Value: catalase
  - Activity: +
  - Ec: 1.11.1.6
- 1:
  - @ref: 6283
  - Value: cytochrome-c oxidase
  - Activity: +
  - Ec: 1.9.3.1
- 2:
  - @ref: 68382
  - Value: alpha-fucosidase
  - Activity: -
  - Ec: 3.2.1.51
- 3:
  - @ref: 68382
  - Value: alpha-mannosidase
  - Activity: -
  - Ec: 3.2.1.24
- 4:
  - @ref: 68382
  - Value: N-acetyl-beta-glucosaminidase
  - Activity: +
  - Ec: 3.2.1.52
- 5:
  - @ref: 68382
  - Value: alpha-glucosidase
  - Activity: -
  - Ec: 3.2.1.20
- 6:
  - @ref: 68382
  - Value: beta-glucosidase
  - Activity: -
  - Ec: 3.2.1.21
- 7:
  - @ref: 68382
  - Value: beta-galactosidase
  - Activity: -
  - Ec: 3.2.1.23
- 8:
  - @ref: 68382
  - Value: beta-glucuronidase
  - Activity: -
  - Ec: 3.2.1.31
- 9:
  - @ref: 68382
  - Value: alpha-galactosidase
  - Activity: -
  - Ec: 3.2.1.22
- 10:
  - @ref: 68382
  - Value: naphthol-AS-BI-phosphohydrolase
  - Activity: +
- 11:
  - @ref: 68382
  - Value: acid phosphatase
  - Activity: +
  - Ec: 3.1.3.2
- 12:
  - @ref: 68382
  - Value: alpha-chymotrypsin
  - Activity: -
  - Ec: 3.4.21.1
- 13:
  - @ref: 68382
  - Value: cystine arylamidase
  - Activity: -
  - Ec: 3.4.11.3
- 14:
  - @ref: 68382
  - Value: trypsin
  - Activity: -
  - Ec: 3.4.21.4
- 15:
  - @ref: 68382
  - Value: valine arylamidase
  - Activity: -
- 16:
  - @ref: 68382
  - Value: lipase (C 14)
  - Activity: -
- 17:
  - @ref: 68382
  - Value: leucine arylamidase
  - Activity: +
  - Ec: 3.4.11.1
- 18:
  - @ref: 68382
  - Value: esterase lipase (C 8)
  - Activity: +
- 19:
  - @ref: 68382
  - Value: esterase (C 4)
  - Activity: +
- 20:
  - @ref: 68382
  - Value: alkaline phosphatase
  - Activity: +
  - Ec: 3.1.3.1
- 21:
  - @ref: 116324
  - Value: oxidase
  - Activity: +
- 22:
  - @ref: 116324
  - Value: beta-galactosidase
  - Activity: +
  - Ec: 3.2.1.23
- 23:
  - @ref: 116324
  - Value: alcohol dehydrogenase
  - Activity: -
  - Ec: 1.1.1.1
- 24:
  - @ref: 116324
  - Value: gelatinase
  - Activity: +/-
- 25:
  - @ref: 116324
  - Value: amylase
  - Activity: -
- 26:
  - @ref: 116324
  - Value: DNase
  - Activity: -
- 27:
  - @ref: 116324
  - Value: caseinase
  - Activity: +
  - Ec: 3.4.21.50
- 28:
  - @ref: 116324
  - Value: catalase
  - Activity: +
  - Ec: 1.11.1.6
- 29:
  - @ref: 116324
  - Value: tween esterase
  - Activity: +
- 30:
  - @ref: 116324
  - Value: lecithinase
  - Activity: +
- 31:
  - @ref: 116324
  - Value: lipase
  - Activity: +
- 32:
  - @ref: 116324
  - Value: lysine decarboxylase
  - Activity: -
  - Ec: 4.1.1.18
- 33:
  - @ref: 116324
  - Value: ornithine decarboxylase
  - Activity: -
  - Ec: 4.1.1.17
- 34:
  - @ref: 116324
  - Value: protease
  - Activity: +
- 35:
  - @ref: 116324
  - Value: urease
  - Activity: -
  - Ec: 3.5.1.5
- 36:
  - @ref: 68369
  - Value: cytochrome oxidase
  - Activity: +
  - Ec: 1.9.3.1
- 37:
  - @ref: 68369
  - Value: beta-glucosidase
  - Activity: +
  - Ec: 3.2.1.21
- 38:
  - @ref: 68369
  - Value: urease
  - Activity: -
  - Ec: 3.5.1.5
- 39:
  - @ref: 68369
  - Value: arginine dihydrolase
  - Activity: -
  - Ec: 3.5.3.6
API zym:
- @ref: 116324
- Control: -
- Alkaline phosphatase: +
- Esterase: +
- Esterase Lipase: +
- Lipase: -
- Leucine arylamidase: +
- Valine arylamidase: -
- Cystine arylamidase: -
- Trypsin: -
- Alpha- Chymotrypsin: -
- Acid phosphatase: +
- Naphthol-AS-BI-phosphohydrolase: +
- Alpha- Galactosidase: -
- Beta- Galactosidase: -
- Beta- Glucuronidase: -
- Alpha- Glucosidase: -
- Beta- Glucosidase: -
- N-acetyl-beta- glucosaminidase: +
- Alpha- Mannosidase: -
- Alpha- Fucosidase: -
API 20NE:
- 0:
  - @ref: 6283
  - NO3: +
  - TRP: -
  - GLU Ferm: -
  - ADH Arg: -
  - URE: -
  - ESC: +
  - GEL: -
  - PNPG: +
  - GLU Assim: +
  - ARA: +
  - MNE: +
  - MAN: +
  - NAG: +
  - MAL: -
  - GNT: +
  - CAP: +
  - ADI: +
  - MLT: +
  - CIT: +
  - PAC: +
  - OX: +
- 1:
  - @ref: 6283
  - NO3: +
  - TRP: -
  - GLU Ferm: -
  - ADH Arg: -
  - URE: -
  - ESC: +
  - GEL: -
  - PNPG: +
  - GLU Assim: +
  - ARA: +
  - MNE: +
  - MAN: +
  - NAG: +
  - MAL: -
  - GNT: +
  - CAP: +
  - ADI: +
  - MLT: +
  - CIT: +
  - PAC: +
  - OX: +
- 2:
  - @ref: 6283
  - NO3: +
  - TRP: -
  - GLU Ferm: -
  - ADH Arg: -
  - URE: -
  - ESC: +
  - GEL: +
  - PNPG: +
  - GLU Assim: +
  - ARA: +
  - MNE: +
  - MAN: +
  - NAG: +
  - MAL: -
  - GNT: +
  - CAP: +
  - ADI: +
  - MLT: +
  - CIT: +
  - PAC: +
API biotype100:
- @ref: 116324
- GLU: +
- FRU: +
- GAL: +
- TRE: +
- MNE: +
- SBE: -
- MEL: -
- SAC: +
- RAF: +
- MTE: -
- MAL: -
- LAC: -
- LTE: -
- MbGa: +
- MaGa: -
- CEL: -
- GEN: -
- MbGu: -
- ESC: +
- RIB: +
- ARA: +
- XYL: +
- PLE: -
- RHA: -
- FUC: +
- MLZ: -
- DARL: +
- LARL: +
- XLT: -
- DUL: +
- TAG: +
- GLY: +
- INO: +
- MAN: +
- MTL: -
- TUR: -
- SOR: +
- ADO: +
- HBG: -
- LYX: +
- ERY: -
- MDG: -
- 3MDG: -
- SAT: +
- MUC: +
- LTAT: +
- DTAT: +
- MTAT: +
- DMLT: +
- LMLT: +
- CATE: +
- TATE: +
- TTE: -
- CIT: +
- GRT: +
- GAT: +
- 2KG: +
- 5KG: -
- TRY: -
- NAG: +
- GNT: +
- PAC: +
- PAT: +
- POBE: +
- QAT: +
- GTE: -
- MOBE: -
- BAT: +
- PPAT: -
- CMT: -
- TGE: -
- BET: +
- PCE: +
- ABT: +
- HIN: +
- LAT: +
- CAP: +
- CYT: +
- HIS: -
- SUC: +
- FUM: +
- GRE: +
- GYT: +
- AVT: +
- ETN: +
- TTN: +
- GLN: +
- ITA: +
- 3OBU: +
- APT: +
- GTT: +
- PRO: +
- DALA: +
- LALA: +
- SER: +
- MNT: +
- PROP: +
- TYR: +
- 2KT: +

Isolation:
- 0:
  - @ref: 6283
  - Sample type: pea rhizosphere
  - Geographic location: Wisconsin
  - Country: USA
  - Origin.country: USA
  - Continent: North America
- 1:
  - @ref: 56273
  - Sample type: Pea rhizosphere
  - Sampling date: 1985
  - Geographic location: WI
  - Country: USA
  - Origin.country: USA
  - Continent: North America
- 2:
  - @ref: 116324
  - Sample type: Plant, Healthy pea plants
  - Geographic location: Wisconsin
  - Country: United States of America
  - Origin.country: USA
  - Continent: North America
  - Isolation date: 1985
Isolation source categories:
- 0:
  - Cat1: #Host
  - Cat2: #Plants
  - Cat3: #Herbaceous plants (Grass,Crops)
- 1:
  - Cat1: #Host Body-Site
  - Cat2: #Plant
  - Cat3: #Rhizosphere
Taxonmaps:
- @ref: 69479
- File name: preview.99_198.png
- Url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_12;96_18;97_18;98_21;99_198&stattab=map
- Last taxonomy: Burkholderia
- 16S sequence: HQ849072
- Sequence Identity: None
- Total samples: 5054
- Soil counts: 1055
- Aquatic counts: 564
- Animal counts: 1930
- Plant counts: 1505

Risk assessment:
- 0:
  - @ref: 6283
  - Biosafety level: 2
  - Biosafety level comment: Risk group (German classification)
- 1:
  - @ref: 116324
  - Biosafety level: 1
  - Biosafety level comment: Risk group (French classification)

16S sequences:
- 0:
  - @ref: 20218
  - Description: Burkholderia ambifaria strain CIP 107266 16S ribosomal RNA gene, partial sequence
  - Accession: EU024177
  - Length: 1313
  - Database: nuccore
  - NCBI tax ID: 152480
- 1:
  - @ref: 20218
  - Description: Burkholderia ambifaria strain LMG 19182 16S ribosomal RNA gene, partial sequence
  - Accession: HQ849072
  - Length: 1124
  - Database: nuccore
  - NCBI tax ID: 152480

Key: 4439317249
DatasetKey: 7e9d3bc6-bb85-42a5-8826-fe2b27552e2c
PublishingOrgKey: 10edba3c-8fe0-4a8c-8767-312d0e2badb5
InstallationKey: f66ca88d-1f6a-49dc-b33b-32960faee57e
HostingOrganizationKey: fbca90e3-8aed-48b1-84e3-369afbd000ce
PublishingCountry: LK
Protocol: EML
LastCrawled: 2025-01-19T05:57:21.219+00:00
LastParsed: 2025-01-31T22:28:33.299+00:00
CrawlId: 35
Extensions:
BasisOfRecord: MACHINE_OBSERVATION
IndividualCount: 1
OccurrenceStatus: PRESENT
TaxonKey: 3219965
KingdomKey: 3
PhylumKey: 111
ClassKey: 362
OrderKey: 648
FamilyKey: 5438
GenusKey: 3219916
SpeciesKey: 3219965
AcceptedTaxonKey: 3219965
ScientificName: Burkholderia ambifaria_A
AcceptedScientificName: Burkholderia ambifaria_A
Kingdom: Bacteria
Phylum: Proteobacteria
Order: Burkholderiales
Family: Burkholderiaceae
Genus: Burkholderia
Species: Burkholderia ambifaria
GenericName: Burkholderia
SpecificEpithet: ambifaria
TaxonRank: SPECIES
TaxonomicStatus: ACCEPTED
DecimalLatitude: 6.141744
DecimalLongitude: 81.119378
Continent: ASIA
Gadm:
- Level0:
  - Gid: LKA
  - Name: Sri Lanka
- Level1:
  - Gid: LKA.8_1
  - Name: Hambantota
- Level2:
  - Gid: LKA.8.4_1
  - Name: Hambantota
Year: 2022
Month: 5
Day: 29
EventDate: 2022-05-29
StartDayOfYear: 149
EndDayOfYear: 149
Issues:
LastInterpreted: 2025-01-31T22:28:33.299+00:00
License: http://creativecommons.org/publicdomain/zero/1.0/legalcode
OrganismQuantity: 1.0
OrganismQuantityType: individuals
IsSequenced: False
Identifiers:
- 0:
  - Identifier: V4R27_1100
Media:
Facts:
Relations:
IsInCluster: False
SamplingProtocol: eDNA sampling from soil
DnaSequenceID:
GeodeticDatum: WGS84
Class: Gammaproteobacteria
CountryCode: LK
RecordedByIDs:
IdentifiedByIDs:
GbifRegion: ASIA
Country: Sri Lanka
PublishedByGbifRegion: ASIA
EventID: V4R27
Identifier: V4R27_1100
GbifID: 4439317249
OccurrenceID: V4R27_1100

Lineage: cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex
LineageEx:
- Taxon:
  - 0:
    - TaxId: 131567
    - ScientificName: cellular organisms
    - Rank: cellular root
  - 1:
    - TaxId: 2
    - ScientificName: Bacteria
    - Rank: domain
  - 2:
    - TaxId: 3379134
    - ScientificName: Pseudomonadati
    - Rank: kingdom
  - 3:
    - TaxId: 1224
    - ScientificName: Pseudomonadota
    - Rank: phylum
  - 4:
    - TaxId: 28216
    - ScientificName: Betaproteobacteria
    - Rank: class
  - 5:
    - TaxId: 80840
    - ScientificName: Burkholderiales
    - Rank: order
  - 6:
    - TaxId: 119060
    - ScientificName: Burkholderiaceae
    - Rank: family
  - 7:
    - TaxId: 32008
    - ScientificName: Burkholderia
    - Rank: genus
  - 8:
    - TaxId: 87882
    - ScientificName: Burkholderia cepacia complex
    - Rank: species group

General Information

Sample Information

Other Information

General Information

Sample Information

Other Information

Morphology

Culture and growth conditions

Physiology and metabolism

Isolation, sampling and environmental information

Safety information

Sequence information

Occurence (geoference records)

Name and taxonomic classification