General Information

Title Inacc No : InaCC B1482, Scientific Name: Myxococcus stipitatus
Organism Myxococcus stipitatus
Sample Type Microbe
Description
External Links
Description URL
None

Sample Information

Sample Attribute
Sample Name InaCC B1482
Sample Title Inacc No : InaCC B1482, Scientific Name: Myxococcus stipitatus
Description
Taxonomy ID 83455
Bioproject Id
Locus Tag Prefix
Strain Myxococcus stipitatus DT06-TB5
Isolate
Isolation Source Soil
Host
Lab Host
Biomaterial Provider
Sample Type cell culture
Collection Date N/A
Geographic Location Name Indonesia:Arboretum Samosir, North Sumatra
Latitude Longitude
Environmental Biome
Depth
Altitude
Collected By
Culture Collection Indonesian Culture Collection (InaCC) B1482
Genotype
Host Tissue Sampled
Identified By
Mating Type
Passage History
Sample Size
Serotype
Serovar
Specimen Voucher
Temperature 25-30
Organism 3107
Growth Media VY/2CX
Center Direktorat Pengelolaan Laboratorium, Fasilitas Riset, dan Kawasan Sains dan Teknologi
Lab Pusat Sekuensing
Submitter Lab Pusat Sekuensing - BRIN
Submitted at 30-09-2024
Published at 30-09-2024

Other Information

  • Key: 4439311178
  • DatasetKey: 7e9d3bc6-bb85-42a5-8826-fe2b27552e2c
  • PublishingOrgKey: 10edba3c-8fe0-4a8c-8767-312d0e2badb5
  • InstallationKey: f66ca88d-1f6a-49dc-b33b-32960faee57e
  • HostingOrganizationKey: fbca90e3-8aed-48b1-84e3-369afbd000ce
  • PublishingCountry: LK
  • Protocol: EML
  • LastCrawled: 2024-07-02T10:12:33.795+00:00
  • LastParsed: 2024-07-02T10:14:11.804+00:00
  • CrawlId: 35
  • Extensions:
  • BasisOfRecord: MACHINE_OBSERVATION
  • IndividualCount: 4
  • OccurrenceStatus: PRESENT
  • TaxonKey: 3220581
  • KingdomKey: 3
  • PhylumKey: 10814448
  • ClassKey: 10714438
  • OrderKey: 1384
  • FamilyKey: 8944
  • GenusKey: 3220562
  • SpeciesKey: 3220581
  • AcceptedTaxonKey: 3220581
  • ScientificName: Myxococcus stipitatus Thaxter, 1897
  • AcceptedScientificName: Myxococcus stipitatus Thaxter, 1897
  • Kingdom: Bacteria
  • Phylum: Myxococcota
  • Order: Myxococcales
  • Family: Myxococcaceae
  • Genus: Myxococcus
  • Species: Myxococcus stipitatus
  • GenericName: Myxococcus
  • SpecificEpithet: stipitatus
  • TaxonRank: SPECIES
  • TaxonomicStatus: ACCEPTED
  • IucnRedListCategory: NE
  • DecimalLatitude: 7.158322
  • DecimalLongitude: 80.192741
  • Continent: ASIA
  • Gadm:
    • Level0:
      • Gid: LKA
      • Name: Sri Lanka
    • Level1:
      • Gid: LKA.12_1
      • Name: Kegalle
    • Level2:
      • Gid: LKA.12.10_1
      • Name: Warakapola
  • Year: 2022
  • Month: 2
  • Day: 8
  • EventDate: 2022-02-08
  • StartDayOfYear: 39
  • EndDayOfYear: 39
  • Issues:
  • LastInterpreted: 2024-07-02T10:14:11.804+00:00
  • License: http://creativecommons.org/publicdomain/zero/1.0/legalcode
  • OrganismQuantity: 4.0
  • OrganismQuantityType: individuals
  • IsSequenced: False
  • Identifiers:
    • 0:
      • Identifier: V4R25_208
  • Media:
  • Facts:
  • Relations:
  • IsInCluster: False
  • SamplingProtocol: eDNA sampling from soil
  • GeodeticDatum: WGS84
  • Class: Myxococcia
  • CountryCode: LK
  • RecordedByIDs:
  • IdentifiedByIDs:
  • Country: Sri Lanka
  • GbifRegion: ASIA
  • PublishedByGbifRegion: ASIA
  • EventID: V4R25
  • Identifier: V4R25_208
  • GbifID: 4439311178
  • OccurrenceID: V4R25_208

  • Multicellular morphology:
    • @ref: 18281
    • Forms multicellular complex: yes
    • Complex name: fruiting body
  • Multimedia:
    • @ref: 5476
    • Multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_14675.jpg
    • Caption: fruiting bodies on agar medium 9
    • Intellectual property rights: © Leibniz-Institut DSMZ

  • Culture medium:
    • 0:
      • @ref: 5476
      • Name: CY-AGAR (DSMZ Medium 67)
      • Growth: yes
      • Link: https://mediadive.dsmz.de/medium/67
      • Composition: Name: CY-AGAR (DSMZ Medium 67) Composition: Agar 15.0 g/l Casitone 3.0 g/l CaCl2 x 2 H2O 1.36 g/l Yeast extract 1.0 g/l Distilled water
    • 1:
      • @ref: 5476
      • Name: VY/2 AGAR (DSMZ Medium 9)
      • Growth: yes
      • Link: https://mediadive.dsmz.de/medium/9
      • Composition: Name: VY/2 AGAR (DSMZ Medium 9) Composition: Agar 15.0 g/l Baker's yeast 5.0 g/l CaCl2 x 2 H2O 1.36 g/l Vitamin B12 0.0005 g/l Distilled water
  • Culture temp:
    • 0:
      • @ref: 5476
      • Growth: positive
      • Type: growth
      • Temperature: 30
    • 1:
      • @ref: 67770
      • Growth: positive
      • Type: growth
      • Temperature: 30

  • Compound production:
    • @ref: 5476
    • Compound: phenylamide

  • Isolation:
    • 0:
      • @ref: 5476
      • Sample type: soil
      • Geographic location: Iguacu
      • Country: Brazil
      • Origin.country: BRA
      • Continent: Middle and South America
    • 1:
      • @ref: 67770
      • Sample type: Lateritic soil sample collected near the Iguaçu waterfalls
      • Country: Brazil
      • Origin.country: BRA
      • Continent: Middle and South America
  • Isolation source categories:
    • Cat1: #Environmental
    • Cat2: #Terrestrial
    • Cat3: #Soil
  • Taxonmaps:
    • @ref: 69479
    • File name: preview.99_1929.png
    • Url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_211;96_740;97_863;98_1007;99_1929&stattab=map
    • Last taxonomy: Myxococcus
    • 16S sequence: DQ768118
    • Sequence Identity: None
    • Total samples: 1378
    • Soil counts: 976
    • Aquatic counts: 133
    • Animal counts: 96
    • Plant counts: 173

  • Risk assessment:
    • @ref: 5476
    • Biosafety level: 1
    • Biosafety level comment: Risk group (German classification)

  • 16S sequences:
    • @ref: 5476
    • Description: Myxococcus stipitatus strain DSM 14675 16S ribosomal RNA gene, partial sequence
    • Accession: DQ768118
    • Length: 1491
    • Database: nuccore
    • NCBI tax ID: 83455
  • Genome sequences:
    • 0:
      • @ref: 66792
      • Description: Myxococcus stipitatus DSM 14675
      • Accession: GCA_000331735
      • Assembly level: complete
      • Database: ncbi
      • NCBI tax ID: 1278073
    • 1:
      • @ref: 66792
      • Description: Myxococcus stipitatus DSM 14675
      • Accession: 1278073.3
      • Assembly level: complete
      • Database: patric
      • NCBI tax ID: 1278073
    • 2:
      • @ref: 66792
      • Description: Myxococcus stipitatus DSM 14675
      • Accession: 2521172697
      • Assembly level: complete
      • Database: img
      • NCBI tax ID: 1278073

  • Lineage: cellular organisms; Bacteria; Myxococcota; Myxococcia; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus
  • LineageEx:
    • Taxon:
      • 0:
        • TaxId: 131567
        • ScientificName: cellular organisms
        • Rank: no rank
      • 1:
        • TaxId: 2
        • ScientificName: Bacteria
        • Rank: superkingdom
      • 2:
        • TaxId: 2818505
        • ScientificName: Myxococcota
        • Rank: phylum
      • 3:
        • TaxId: 32015
        • ScientificName: Myxococcia
        • Rank: class
      • 4:
        • TaxId: 29
        • ScientificName: Myxococcales
        • Rank: order
      • 5:
        • TaxId: 80811
        • ScientificName: Cystobacterineae
        • Rank: suborder
      • 6:
        • TaxId: 31
        • ScientificName: Myxococcaceae
        • Rank: family
      • 7:
        • TaxId: 32
        • ScientificName: Myxococcus
        • Rank: genus