BioRepo | Biosample

Other Information

Key: 4901324279
DatasetKey: 50c9509d-22c7-4a22-a47d-8c48425ef4a7
PublishingOrgKey: 28eb1a3f-1c15-4a95-931a-4af90ecb574d
InstallationKey: 997448a8-f762-11e1-a439-00145eb45e9a
HostingOrganizationKey: 28eb1a3f-1c15-4a95-931a-4af90ecb574d
PublishingCountry: US
Protocol: DWC_ARCHIVE
LastCrawled: 2024-10-18T20:49:13.203+00:00
LastParsed: 2024-10-19T13:24:16.835+00:00
CrawlId: 492
Extensions:
- Http://rs.gbif.org/terms/1.0/Multimedia:
  - 0:
    - Http://purl.org/dc/terms/references: https://www.inaturalist.org/photos/361274323
    - Http://purl.org/dc/terms/creator: pheleka_nfs
    - Http://purl.org/dc/terms/created: 2024-03-29T13:34:09Z
    - Http://rs.tdwg.org/dwc/terms/catalogNumber: 361274323
    - Http://purl.org/dc/terms/rightsHolder: pheleka_nfs
    - Http://purl.org/dc/terms/publisher: iNaturalist
    - Http://purl.org/dc/terms/license: http://creativecommons.org/licenses/by-nc/4.0/
    - Http://purl.org/dc/terms/format: image/jpeg
    - Http://purl.org/dc/terms/identifier: https://inaturalist-open-data.s3.amazonaws.com/photos/361274323/original.jpg
    - Http://purl.org/dc/terms/type: StillImage
BasisOfRecord: HUMAN_OBSERVATION
OccurrenceStatus: PRESENT
TaxonKey: 9156233
KingdomKey: 3
PhylumKey: 111
ClassKey: 362
OrderKey: 820
FamilyKey: 5611
GenusKey: 3220012
SpeciesKey: 9156233
AcceptedTaxonKey: 9156233
ScientificName: Xanthomonas campestris_B
AcceptedScientificName: Xanthomonas campestris_B
Kingdom: Bacteria
Phylum: Proteobacteria
Order: Xanthomonadales
Family: Xanthomonadaceae
Genus: Xanthomonas
Species: Xanthomonas campestris
GenericName: Xanthomonas
SpecificEpithet: campestris
TaxonRank: SPECIES
TaxonomicStatus: ACCEPTED
DateIdentified: 2024-03-29T13:46:44
DecimalLatitude: -30.20372
DecimalLongitude: 30.087932
CoordinateUncertaintyInMeters: 4.0
Continent: AFRICA
StateProvince: KwaZulu-Natal
Gadm:
- Level0:
  - Gid: ZAF
  - Name: South Africa
- Level1:
  - Gid: ZAF.4_1
  - Name: KwaZulu-Natal
- Level2:
  - Gid: ZAF.4.4_1
  - Name: Sisonke
- Level3:
  - Gid: ZAF.4.4.4_1
  - Name: Ubuhlebezwe
Year: 2024
Month: 3
Day: 29
EventDate: 2024-03-29T15:34:09
StartDayOfYear: 89
EndDayOfYear: 89
Issues:
- 0: COORDINATE_ROUNDED
- 1: CONTINENT_DERIVED_FROM_COORDINATES
- 2: TAXON_MATCH_TAXON_ID_IGNORED
Modified: 2024-06-26T08:40:27.000+00:00
LastInterpreted: 2024-10-19T13:24:16.835+00:00
References: https://www.inaturalist.org/observations/204393335
License: http://creativecommons.org/licenses/by-nc/4.0/legalcode
IsSequenced: False
Identifiers:
- 0:
  - Identifier: 204393335
Media:
- 0:
  - Type: StillImage
  - Format: image/jpeg
  - References: https://www.inaturalist.org/photos/361274323
  - Created: 2024-03-29T13:34:09.000+00:00
  - Creator: pheleka_nfs
  - Publisher: iNaturalist
  - License: http://creativecommons.org/licenses/by-nc/4.0/
  - RightsHolder: pheleka_nfs
  - Identifier: https://inaturalist-open-data.s3.amazonaws.com/photos/361274323/original.jpg
Facts:
Relations:
IsInCluster: False
DatasetName: iNaturalist research-grade observations
RecordedBy: pheleka_nfs
IdentifiedBy: pheleka_nfs
GeodeticDatum: WGS84
Class: Gammaproteobacteria
CountryCode: ZA
RecordedByIDs:
IdentifiedByIDs:
Country: South Africa
GbifRegion: AFRICA
PublishedByGbifRegion: NORTH_AMERICA
RightsHolder: pheleka_nfs
Identifier: 204393335
Http://unknown.org/nick: pheleka_nfs
VerbatimEventDate: 2024-03-29 15:34:09+02:00
VerbatimLocality: Ubuhlebezwe, Ixopo, KZN, ZA
CollectionCode: Observations
GbifID: 4901324279
OccurrenceID: https://www.inaturalist.org/observations/204393335
TaxonID: 384743
CatalogNumber: 204393335
InstitutionCode: iNaturalist
EventTime: 15:34:09+02:00
Http://unknown.org/captive: wild
IdentificationID: 464522983

Cell morphology:
- @ref: 117116
- Gram stain: negative
- Cell shape: oval-shaped
- Motility: no
Pigmentation:
- @ref: 117116
- Production: no
- Name: Pyocyanin

Culture medium:
- 0:
  - @ref: 1411
  - Name: NUTRIENT AGAR (DSMZ Medium 1)
  - Growth: yes
  - Link: https://mediadive.dsmz.de/medium/1
  - Composition: Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
- 1:
  - @ref: 1411
  - Name: R2A MEDIUM (DSMZ Medium 830)
  - Growth: yes
  - Link: https://mediadive.dsmz.de/medium/830
  - Composition: Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
- 2:
  - @ref: 38386
  - Name: MEDIUM 3 - Columbia agar
  - Growth: yes
  - Composition: Columbia agar (39.000 g);distilled water (1000.000 ml)
- 3:
  - @ref: 117116
  - Name: CIP Medium 3
  - Growth: yes
  - Link: https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3
- 4:
  - @ref: 117116
  - Name: CIP Medium 72
  - Growth: yes
  - Link: https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72
Culture temp:
- 0:
  - @ref: 1411
  - Growth: positive
  - Type: growth
  - Temperature: 28
- 1:
  - @ref: 38386
  - Growth: positive
  - Type: growth
  - Temperature: 25
- 2:
  - @ref: 57820
  - Growth: positive
  - Type: growth
  - Temperature: 28
- 3:
  - @ref: 67770
  - Growth: positive
  - Type: growth
  - Temperature: 28
- 4:
  - @ref: 117116
  - Growth: positive
  - Type: growth
  - Temperature: 10-37
- 5:
  - @ref: 117116
  - Growth: no
  - Type: growth
  - Temperature: 41

Oxygen tolerance:
- 0:
  - @ref: 57820
  - Oxygen tolerance: aerobe
- 1:
  - @ref: 117116
  - Oxygen tolerance: obligate aerobe
Halophily:
- 0:
  - @ref: 117116
  - Salt: NaCl
  - Growth: positive
  - Tested relation: growth
  - Concentration: 0-2 %
- 1:
  - @ref: 117116
  - Salt: NaCl
  - Growth: no
  - Tested relation: growth
  - Concentration: 4 %
- 2:
  - @ref: 117116
  - Salt: NaCl
  - Growth: no
  - Tested relation: growth
  - Concentration: 6 %
- 3:
  - @ref: 117116
  - Salt: NaCl
  - Growth: no
  - Tested relation: growth
  - Concentration: 8 %
- 4:
  - @ref: 117116
  - Salt: NaCl
  - Growth: no
  - Tested relation: growth
  - Concentration: 10 %
Metabolite utilization:
- 0:
  - @ref: 22958
  - Chebi-ID: 16763
  - Metabolite: 2-oxobutanoate
  - Utilization activity: +
  - Kind of utilization tested: respiration
- 1:
  - @ref: 22958
  - Chebi-ID: 22599
  - Metabolite: arabinose
  - Utilization activity: -
  - Kind of utilization tested: builds acid from
- 2:
  - @ref: 22958
  - Chebi-ID: 17057
  - Metabolite: cellobiose
  - Utilization activity: +
  - Kind of utilization tested: builds acid from
- 3:
  - @ref: 22958
  - Chebi-ID: 30612
  - Metabolite: D-glucarate
  - Utilization activity: +
  - Kind of utilization tested: respiration
- 4:
  - @ref: 22958
  - Chebi-ID: 16634
  - Metabolite: raffinose
  - Utilization activity: +
  - Kind of utilization tested: respiration
- 5:
  - @ref: 22958
  - Chebi-ID: 15740
  - Metabolite: formate
  - Utilization activity: -
  - Kind of utilization tested: respiration
- 6:
  - @ref: 22958
  - Chebi-ID: 5291
  - Metabolite: gelatin
  - Utilization activity: -
  - Kind of utilization tested: hydrolysis
- 7:
  - @ref: 22958
  - Chebi-ID: 17234
  - Metabolite: glucose
  - Utilization activity: +
  - Kind of utilization tested: builds acid from
- 8:
  - @ref: 22958
  - Chebi-ID: 15978
  - Metabolite: glycerol 3-phosphate
  - Utilization activity: +
  - Kind of utilization tested: respiration
- 9:
  - @ref: 22958
  - Chebi-ID: 17196
  - Metabolite: L-asparagine
  - Utilization activity: -
  - Kind of utilization tested: respiration
- 10:
  - @ref: 22958
  - Chebi-ID: 29991
  - Metabolite: L-aspartate
  - Utilization activity: -
  - Kind of utilization tested: respiration
- 11:
  - @ref: 22958
  - Chebi-ID: 15729
  - Metabolite: L-ornithine
  - Utilization activity: -
  - Kind of utilization tested: respiration
- 12:
  - @ref: 22958
  - Chebi-ID: 16857
  - Metabolite: L-threonine
  - Utilization activity: +
  - Kind of utilization tested: respiration
- 13:
  - @ref: 22958
  - Chebi-ID: 29864
  - Metabolite: mannitol
  - Utilization activity: +
  - Kind of utilization tested: builds acid from
- 14:
  - @ref: 22958
  - Chebi-ID: 17272
  - Metabolite: propionate
  - Utilization activity: +
  - Kind of utilization tested: respiration
- 15:
  - @ref: 22958
  - Chebi-ID: 30911
  - Metabolite: sorbitol
  - Utilization activity: -
  - Kind of utilization tested: builds acid from
- 16:
  - @ref: 22958
  - Chebi-ID: 28017
  - Metabolite: starch
  - Utilization activity: +
  - Kind of utilization tested: hydrolysis
- 17:
  - @ref: 22958
  - Chebi-ID: 16704
  - Metabolite: uridine
  - Utilization activity: -
  - Kind of utilization tested: respiration
- 18:
  - @ref: 22958
  - Chebi-ID: 27248
  - Metabolite: urocanic acid
  - Utilization activity: +
  - Kind of utilization tested: respiration
- 19:
  - @ref: 68369
  - Chebi-ID: 25115
  - Metabolite: malate
  - Utilization activity: +
  - Kind of utilization tested: assimilation
- 20:
  - @ref: 68369
  - Chebi-ID: 17128
  - Metabolite: adipate
  - Utilization activity: -
  - Kind of utilization tested: assimilation
- 21:
  - @ref: 68369
  - Chebi-ID: 27689
  - Metabolite: decanoate
  - Utilization activity: -
  - Kind of utilization tested: assimilation
- 22:
  - @ref: 68369
  - Chebi-ID: 24265
  - Metabolite: gluconate
  - Utilization activity: -
  - Kind of utilization tested: assimilation
- 23:
  - @ref: 68369
  - Chebi-ID: 17306
  - Metabolite: maltose
  - Utilization activity: -
  - Kind of utilization tested: assimilation
- 24:
  - @ref: 68369
  - Chebi-ID: 59640
  - Metabolite: N-acetylglucosamine
  - Utilization activity: +
  - Kind of utilization tested: assimilation
- 25:
  - @ref: 68369
  - Chebi-ID: 16899
  - Metabolite: D-mannitol
  - Utilization activity: -
  - Kind of utilization tested: assimilation
- 26:
  - @ref: 68369
  - Chebi-ID: 16024
  - Metabolite: D-mannose
  - Utilization activity: +
  - Kind of utilization tested: assimilation
- 27:
  - @ref: 68369
  - Chebi-ID: 30849
  - Metabolite: L-arabinose
  - Utilization activity: -
  - Kind of utilization tested: assimilation
- 28:
  - @ref: 68369
  - Chebi-ID: 17634
  - Metabolite: D-glucose
  - Utilization activity: +
  - Kind of utilization tested: assimilation
- 29:
  - @ref: 68369
  - Chebi-ID: 5291
  - Metabolite: gelatin
  - Utilization activity: +
  - Kind of utilization tested: hydrolysis
- 30:
  - @ref: 68369
  - Chebi-ID: 4853
  - Metabolite: esculin
  - Utilization activity: +
  - Kind of utilization tested: hydrolysis
- 31:
  - @ref: 68369
  - Chebi-ID: 16199
  - Metabolite: urea
  - Utilization activity: -
  - Kind of utilization tested: hydrolysis
- 32:
  - @ref: 68369
  - Chebi-ID: 29016
  - Metabolite: arginine
  - Utilization activity: -
  - Kind of utilization tested: hydrolysis
- 33:
  - @ref: 68369
  - Chebi-ID: 17634
  - Metabolite: D-glucose
  - Utilization activity: -
  - Kind of utilization tested: fermentation
- 34:
  - @ref: 68369
  - Chebi-ID: 27897
  - Metabolite: tryptophan
  - Utilization activity: -
  - Kind of utilization tested: energy source
- 35:
  - @ref: 68369
  - Chebi-ID: 17632
  - Metabolite: nitrate
  - Utilization activity: -
  - Kind of utilization tested: reduction
- 36:
  - @ref: 117116
  - Chebi-ID: 16947
  - Metabolite: citrate
  - Utilization activity: +
  - Kind of utilization tested: carbon source
- 37:
  - @ref: 117116
  - Chebi-ID: 4853
  - Metabolite: esculin
  - Utilization activity: +
  - Kind of utilization tested: hydrolysis
- 38:
  - @ref: 117116
  - Chebi-ID: 17632
  - Metabolite: nitrate
  - Utilization activity: -
  - Kind of utilization tested: reduction
- 39:
  - @ref: 117116
  - Chebi-ID: 16301
  - Metabolite: nitrite
  - Utilization activity: -
  - Kind of utilization tested: reduction
- 40:
  - @ref: 117116
  - Chebi-ID: 17632
  - Metabolite: nitrate
  - Utilization activity: -
  - Kind of utilization tested: respiration
Metabolite production:
- 0:
  - @ref: 68369
  - Chebi-ID: 35581
  - Metabolite: indole
  - Production: no
- 1:
  - @ref: 117116
  - Chebi-ID: 35581
  - Metabolite: indole
  - Production: no
Metabolite tests:
- @ref: 68369
- Chebi-ID: 35581
- Metabolite: indole
- Indole test: -
Enzymes:
- 0:
  - @ref: 22958
  - Value: gelatinase
  - Activity: -
- 1:
  - @ref: 68369
  - Value: cytochrome oxidase
  - Activity: -
  - Ec: 1.9.3.1
- 2:
  - @ref: 68369
  - Value: gelatinase
  - Activity: +
- 3:
  - @ref: 68369
  - Value: beta-glucosidase
  - Activity: +
  - Ec: 3.2.1.21
- 4:
  - @ref: 68369
  - Value: urease
  - Activity: -
  - Ec: 3.5.1.5
- 5:
  - @ref: 68369
  - Value: arginine dihydrolase
  - Activity: -
  - Ec: 3.5.3.6
- 6:
  - @ref: 117116
  - Value: oxidase
  - Activity: +
- 7:
  - @ref: 117116
  - Value: beta-galactosidase
  - Activity: +
  - Ec: 3.2.1.23
- 8:
  - @ref: 117116
  - Value: alcohol dehydrogenase
  - Activity: -
  - Ec: 1.1.1.1
- 9:
  - @ref: 117116
  - Value: gelatinase
  - Activity: +/-
- 10:
  - @ref: 117116
  - Value: amylase
  - Activity: +
- 11:
  - @ref: 117116
  - Value: DNase
  - Activity: +
- 12:
  - @ref: 117116
  - Value: caseinase
  - Activity: +
  - Ec: 3.4.21.50
- 13:
  - @ref: 117116
  - Value: catalase
  - Activity: +
  - Ec: 1.11.1.6
- 14:
  - @ref: 117116
  - Value: tween esterase
  - Activity: +
- 15:
  - @ref: 117116
  - Value: lecithinase
  - Activity: +
- 16:
  - @ref: 117116
  - Value: lipase
  - Activity: +
- 17:
  - @ref: 117116
  - Value: lysine decarboxylase
  - Activity: -
  - Ec: 4.1.1.18
- 18:
  - @ref: 117116
  - Value: ornithine decarboxylase
  - Activity: -
  - Ec: 4.1.1.17
- 19:
  - @ref: 117116
  - Value: tryptophan deaminase
  - Activity: -
- 20:
  - @ref: 117116
  - Value: urease
  - Activity: -
  - Ec: 3.5.1.5
- 21:
  - @ref: 68382
  - Value: alkaline phosphatase
  - Activity: +
  - Ec: 3.1.3.1
- 22:
  - @ref: 68382
  - Value: esterase (C 4)
  - Activity: -
- 23:
  - @ref: 68382
  - Value: lipase (C 14)
  - Activity: -
- 24:
  - @ref: 68382
  - Value: leucine arylamidase
  - Activity: +
  - Ec: 3.4.11.1
- 25:
  - @ref: 68382
  - Value: cystine arylamidase
  - Activity: -
  - Ec: 3.4.11.3
- 26:
  - @ref: 68382
  - Value: acid phosphatase
  - Activity: +
  - Ec: 3.1.3.2
- 27:
  - @ref: 68382
  - Value: naphthol-AS-BI-phosphohydrolase
  - Activity: +
- 28:
  - @ref: 68382
  - Value: beta-glucuronidase
  - Activity: -
  - Ec: 3.2.1.31
- 29:
  - @ref: 68382
  - Value: alpha-glucosidase
  - Activity: -
  - Ec: 3.2.1.20
- 30:
  - @ref: 68382
  - Value: alpha-mannosidase
  - Activity: -
  - Ec: 3.2.1.24
- 31:
  - @ref: 68382
  - Value: alpha-fucosidase
  - Activity: -
  - Ec: 3.2.1.51
Fatty acid profile:
- Fatty acids:
  - 0:
    - @ref: 57820
    - Fatty acid: C10:0
    - Percentage: 0.5
    - ECL: 10
  - 1:
    - @ref: 57820
    - Fatty acid: C14:0
    - Percentage: 0.7
    - ECL: 14
  - 2:
    - @ref: 57820
    - Fatty acid: C15:0
    - Percentage: 1.5
    - ECL: 15
  - 3:
    - @ref: 57820
    - Fatty acid: C16:0
    - Percentage: 2.4
    - ECL: 16
  - 4:
    - @ref: 57820
    - Fatty acid: C17:0
    - Percentage: 0.3
    - ECL: 17
  - 5:
    - @ref: 57820
    - Fatty acid: C11:0 3OH
    - Percentage: 0.3
    - ECL: 12.441
  - 6:
    - @ref: 57820
    - Fatty acid: C11:0 ANTEISO
    - Percentage: 0.2
    - ECL: 10.693
  - 7:
    - @ref: 57820
    - Fatty acid: C11:0 iso
    - Percentage: 4.2
    - ECL: 10.605
  - 8:
    - @ref: 57820
    - Fatty acid: C11:0 ISO 3OH
    - Percentage: 2.1
    - ECL: 12.09
  - 9:
    - @ref: 57820
    - Fatty acid: C12:0 3OH
    - Percentage: 1.3
    - ECL: 13.455
  - 10:
    - @ref: 57820
    - Fatty acid: C13:0 2OH
    - Percentage: 0.3
    - ECL: 14.191
  - 11:
    - @ref: 57820
    - Fatty acid: C13:0 ISO 3OH
    - Percentage: 3.3
    - ECL: 14.11
  - 12:
    - @ref: 57820
    - Fatty acid: C14:0 ISO
    - Percentage: 0.4
    - ECL: 13.618
  - 13:
    - @ref: 57820
    - Fatty acid: C15:0 ANTEISO
    - Percentage: 14.7
    - ECL: 14.711
  - 14:
    - @ref: 57820
    - Fatty acid: C15:0 ISO
    - Percentage: 31
    - ECL: 14.621
  - 15:
    - @ref: 57820
    - Fatty acid: C15:1 ISO F
    - Percentage: 0.9
    - ECL: 14.414
  - 16:
    - @ref: 57820
    - Fatty acid: C15:1 ω6c
    - Percentage: 0.7
    - ECL: 14.856
  - 17:
    - @ref: 57820
    - Fatty acid: C16:0 iso
    - Percentage: 1.6
    - ECL: 15.626
  - 18:
    - @ref: 57820
    - Fatty acid: C16:1 ω7c
    - Percentage: 9.5
    - ECL: 15.819
  - 19:
    - @ref: 57820
    - Fatty acid: C16:1 ω9c
    - Percentage: 1.2
    - ECL: 15.774
  - 20:
    - @ref: 57820
    - Fatty acid: C17:0 anteiso
    - Percentage: 0.8
    - ECL: 16.722
  - 21:
    - @ref: 57820
    - Fatty acid: C17:0 iso
    - Percentage: 6.5
    - ECL: 16.629
  - 22:
    - @ref: 57820
    - Fatty acid: C17:0 iso 3OH
    - Percentage: 0.3
    - ECL: 18.161
  - 23:
    - @ref: 57820
    - Fatty acid: C17:1 ISO I/C16:0 DMA
    - Percentage: 0.4
    - ECL: 16.481
  - 24:
    - @ref: 57820
    - Fatty acid: C17:1 ω6c
    - Percentage: 0.4
    - ECL: 16.862
  - 25:
    - @ref: 57820
    - Fatty acid: C17:1 ω8c
    - Percentage: 1.5
    - ECL: 16.792
  - 26:
    - @ref: 57820
    - Fatty acid: C17:1 ω9c ISO
    - Percentage: 10.9
    - ECL: 16.416
  - 27:
    - @ref: 57820
    - Fatty acid: C18:1 ω9c
    - Percentage: 0.6
    - ECL: 17.769
  - 28:
    - @ref: 57820
    - Fatty acid: C18:2 ω6,9c/C18:0 ANTE
    - Percentage: 0.8
    - ECL: 17.724
  - 29:
    - @ref: 57820
    - Fatty acid: Unidentified
    - Percentage: 0.2
    - ECL: 12.58
  - 30:
    - @ref: 57820
    - Fatty acid: unknown 11.798
    - Percentage: 1
    - ECL: 11.798
- Type of FA analysis: whole cell analysis
- Method/protocol: CCUG
API zym:
- 0:
  - @ref: 57820
  - Control: -
  - Alkaline phosphatase: +
  - Esterase: -
  - Esterase Lipase: +
  - Lipase: -
  - Leucine arylamidase: +
  - Valine arylamidase: +
  - Cystine arylamidase: -
  - Trypsin: +
  - Alpha- Chymotrypsin: +
  - Acid phosphatase: +
  - Naphthol-AS-BI-phosphohydrolase: +
  - Alpha- Galactosidase: +
  - Beta- Galactosidase: +
  - Beta- Glucuronidase: -
  - Alpha- Glucosidase: -
  - Beta- Glucosidase: +
  - N-acetyl-beta- glucosaminidase: +
  - Alpha- Mannosidase: -
  - Alpha- Fucosidase: -
- 1:
  - @ref: 117116
  - Control: -
  - Alkaline phosphatase: +
  - Esterase: -
  - Esterase Lipase: -
  - Lipase: -
  - Leucine arylamidase: +
  - Valine arylamidase: -
  - Cystine arylamidase: -
  - Trypsin: -
  - Alpha- Chymotrypsin: -
  - Acid phosphatase: +
  - Naphthol-AS-BI-phosphohydrolase: +
  - Alpha- Galactosidase: -
  - Beta- Galactosidase: -
  - Beta- Glucuronidase: -
  - Alpha- Glucosidase: -
  - Beta- Glucosidase: -
  - N-acetyl-beta- glucosaminidase: -
  - Alpha- Mannosidase: -
  - Alpha- Fucosidase: -
API 20NE:
- @ref: 57820
- NO3: -
- TRP: -
- GLU Ferm: -
- ADH Arg: -
- URE: -
- ESC: +
- GEL: +
- PNPG: +
- GLU Assim: +
- ARA: -
- MNE: +
- MAN: -
- NAG: +
- MAL: -
- GNT: -
- CAP: -
- ADI: -
- MLT: +
- CIT: +
- PAC: -
- OX: -
API biotype100:
- @ref: 117116
- GLU: +
- FRU: +
- GAL: +
- TRE: +
- MNE: +
- SBE: -
- MEL: +
- SAC: +
- RAF: -
- MTE: +
- MAL: +
- LAC: -
- LTE: -
- MbGa: -
- MaGa: -
- CEL: +
- GEN: -
- MbGu: -
- ESC: +
- RIB: -
- ARA: +
- XYL: +
- PLE: -
- RHA: -
- FUC: +
- MLZ: -
- DARL: -
- LARL: -
- XLT: -
- DUL: -
- TAG: -
- GLY: +
- INO: -
- MAN: -
- MTL: -
- TUR: -
- SOR: -
- ADO: -
- HBG: -
- LYX: +
- ERY: -
- MDG: -
- 3MDG: -
- SAT: +
- MUC: +
- LTAT: -
- DTAT: -
- MTAT: -
- DMLT: -
- LMLT: +
- CATE: -
- TATE: +
- TTE: -
- CIT: +
- GRT: -
- GAT: -
- 2KG: -
- 5KG: -
- TRY: -
- NAG: +
- GNT: -
- PAC: -
- PAT: +
- POBE: -
- QAT: -
- GTE: -
- MOBE: -
- BAT: -
- PPAT: -
- CMT: -
- TGE: -
- BET: -
- PCE: -
- ABT: -
- HIN: -
- LAT: +
- CAP: -
- CYT: -
- HIS: -
- SUC: +
- FUM: +
- GRE: -
- GYT: -
- AVT: -
- ETN: -
- TTN: -
- GLN: -
- ITA: -
- 3OBU: -
- APT: -
- GTT: +
- PRO: -
- DALA: -
- LALA: +
- SER: +
- MNT: +
- PROP: +
- TYR: -
- 2KT: -

Isolation:
- 0:
 - @ref: 1411
 - Sample type: Brassica oleracea var. gemmifera
 - Host species: Brassica oleracea var. gemmifera
 - Country: United Kingdom
 - Origin.country: GBR
 - Continent: Europe
- 1:
 - @ref: 57820
 - Sample type: Brassica oleracea (Gemmifera Group),stem
 - Sampling date: 1957
 - Country: United Kingdom
 - Origin.country: GBR
 - Continent: Europe
- 2:
 - @ref: 67770
 - Sample type: Brassica oleracea var. gemmifera
 - Host species: Brassica oleracea var. gemmifera
 - Country: United Kingdom
 - Origin.country: GBR
 - Continent: Europe
- 3:
 - @ref: 117116
 - Sample type: Food, Brassica oleracea var. gemmifera
 - Country: United Kingdom
 - Origin.country: GBR
 - Continent: Europe
Isolation source categories:
- Cat1: #Host
- Cat2: #Plants
- Cat3: #Herbaceous plants (Grass,Crops)
Taxonmaps:
- @ref: 69479
- File name: preview.99_92.png
- Url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_17;96_73;97_76;98_83;99_92&stattab=map
- Last taxonomy: Xanthomonas
- 16S sequence: X95917
- Sequence Identity: None
- Total samples: 52152
- Soil counts: 10026
- Aquatic counts: 6826
- Animal counts: 28252
- Plant counts: 7048

Risk assessment:
- 0:
  - @ref: 1411
  - Pathogenicity plant: yes
  - Biosafety level: 1
  - Biosafety level comment: Risk group (German classification)
- 1:
  - @ref: 117116
  - Biosafety level: 1
  - Biosafety level comment: Risk group (French classification)

16S sequences:
- 0:
  - @ref: 20218
  - Description: Xanthomonas campestris pv. campestris clone K0032 16S-23S ribosomal RNA intergenic spacer and 23S ribosomal RNA gene, partial sequence
  - Accession: HM181724
  - Length: 557
  - Database: nuccore
  - NCBI tax ID: 340
- 1:
  - @ref: 67770
  - Description: X.campestris 16S rRNA gene
  - Accession: X95917
  - Length: 1502
  - Database: nuccore
  - NCBI tax ID: 339
- 2:
  - @ref: 124043
  - Description: Xanthomonas campestris strain LMG568 16S-23S ribosomal RNA intergenic spacer, complete sequence.
  - Accession: AF209755
  - Length: 509
  - Database: nuccore
  - NCBI tax ID: 339
Genome sequences:
- 0:
  - @ref: 66792
  - Description: Xanthomonas campestris pv. campestris str. ATCC 33913
  - Accession: GCA_000007145
  - Assembly level: complete
  - Database: ncbi
  - NCBI tax ID: 190485
- 1:
  - @ref: 66792
  - Description: Xanthomonas campestris pv. campestris NCPPB 528
  - Accession: GCA_020813135
  - Assembly level: contig
  - Database: ncbi
  - NCBI tax ID: 340
- 2:
  - @ref: 66792
  - Description: Xanthomonas campestris pv. campestris str. ATCC 33913
  - Accession: 190485.4
  - Assembly level: complete
  - Database: patric
  - NCBI tax ID: 190485
- 3:
  - @ref: 66792
  - Description: Xanthomonas campestris pv. Campestris ATCC 33913
  - Accession: 637000344
  - Assembly level: complete
  - Database: img
  - NCBI tax ID: 190485

Lineage: cellular organisms; Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales; Lysobacteraceae; Xanthomonas
LineageEx:
- Taxon:
  - 0:
    - TaxId: 131567
    - ScientificName: cellular organisms
    - Rank: no rank
  - 1:
    - TaxId: 2
    - ScientificName: Bacteria
    - Rank: superkingdom
  - 2:
    - TaxId: 1224
    - ScientificName: Pseudomonadota
    - Rank: phylum
  - 3:
    - TaxId: 1236
    - ScientificName: Gammaproteobacteria
    - Rank: class
  - 4:
    - TaxId: 135614
    - ScientificName: Lysobacterales
    - Rank: order
  - 5:
    - TaxId: 32033
    - ScientificName: Lysobacteraceae
    - Rank: family
  - 6:
    - TaxId: 338
    - ScientificName: Xanthomonas
    - Rank: genus

General Information

Sample Information

Other Information

General Information

Sample Information

Other Information

Occurence (geoference records)

Morphology

Culture and growth conditions

Physiology and metabolism

Isolation, sampling and environmental information

Safety information

Sequence information

Name and taxonomic classification