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General Information
Title Inacc No : InaCC B342, Scientific Name: Sporosarcina luteola
Organism Sporosarcina luteola
Sample Type Microbe
Description
External Links
Description URL
None

Sample Information
Sample Attribute
Sample Name InaCC B342
Sample Title Inacc No : InaCC B342, Scientific Name: Sporosarcina luteola
Description
Taxonomy ID 582850
Bioproject Id
Locus Tag Prefix
Strain Sporosarcina luteola BST0417
Isolate
Isolation Source Stone
Host
Lab Host
Biomaterial Provider
Sample Type cell culture
Collection Date N/A
Geographic Location Name Indonesia; Satonda island
Latitude Longitude
Environmental Biome
Depth
Altitude
Collected By P. Lisdiyanti
Culture Collection Indonesian Culture Collection (InaCC) B342
Genotype
Host Tissue Sampled
Identified By
Mating Type
Passage History
Sample Size
Serotype
Serovar
Specimen Voucher
Temperature
Organism 3123
Growth Media NA
Center Direktorat Pengelolaan Laboratorium, Fasilitas Riset, dan Kawasan Sains dan Teknologi
Lab Pusat Sekuensing
Submitter Lab Pusat Sekuensing - BRIN
Submitted at 27-09-2024
Published at 30-09-2024

Other Information

  • Cell morphology:
    • @ref: 120690
    • Gram stain: positive
    • Cell shape: rod-shaped
    • Motility: yes

  • Culture medium:
    • 0:
      • @ref: 16734
      • Name: BHI MEDIUM (DSMZ Medium 215)
      • Growth: yes
      • Link: https://mediadive.dsmz.de/medium/215
      • Composition: Name: BHI MEDIUM (DSMZ Medium 215; with strain-specific modifications) Composition: Brain heart infusion 37.0 g/l MnSO4 Distilled water
    • 1:
      • @ref: 16734
      • Name: CASO AGAR (MERCK 105458) (DSMZ Medium 220)
      • Growth: yes
      • Link: https://mediadive.dsmz.de/medium/220
      • Composition: Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water
    • 2:
      • @ref: 33338
      • Name: MEDIUM 29- Brain heart agar
      • Growth: yes
      • Composition: Distilled water make up to (1000.000 ml);Brain heart infusion agar (52.000 g)
    • 3:
      • @ref: 120690
      • Name: CIP Medium 29
      • Growth: yes
      • Link: https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=29
  • Culture temp:
    • 0:
      • @ref: 16734
      • Growth: positive
      • Type: growth
      • Temperature: 30
    • 1:
      • @ref: 33338
      • Growth: positive
      • Type: growth
      • Temperature: 30
    • 2:
      • @ref: 67770
      • Growth: positive
      • Type: growth
      • Temperature: 30

  • Oxygen tolerance:
    • @ref: 120690
    • Oxygen tolerance: obligate aerobe
  • Murein:
    • @ref: 16734
    • Murein short key: A11.33
    • Type: A4alpha L-Lys-D-Glu
  • Observation:
    • @ref: 67770
    • Observation: quinones: MK-7
  • Metabolite utilization:
    • 0:
      • @ref: 120690
      • Chebi-ID: 17632
      • Metabolite: nitrate
      • Utilization activity: +
      • Kind of utilization tested: reduction
    • 1:
      • @ref: 120690
      • Chebi-ID: 16301
      • Metabolite: nitrite
      • Utilization activity: -
      • Kind of utilization tested: reduction
  • Metabolite production:
    • @ref: 120690
    • Chebi-ID: 35581
    • Metabolite: indole
    • Production: no
  • Enzymes:
    • 0:
      • @ref: 68382
      • Value: alpha-fucosidase
      • Activity: -
      • Ec: 3.2.1.51
    • 1:
      • @ref: 68382
      • Value: alpha-mannosidase
      • Activity: -
      • Ec: 3.2.1.24
    • 2:
      • @ref: 68382
      • Value: N-acetyl-beta-glucosaminidase
      • Activity: -
      • Ec: 3.2.1.52
    • 3:
      • @ref: 68382
      • Value: beta-glucosidase
      • Activity: -
      • Ec: 3.2.1.21
    • 4:
      • @ref: 68382
      • Value: alpha-glucosidase
      • Activity: -
      • Ec: 3.2.1.20
    • 5:
      • @ref: 68382
      • Value: beta-glucuronidase
      • Activity: -
      • Ec: 3.2.1.31
    • 6:
      • @ref: 68382
      • Value: beta-galactosidase
      • Activity: -
      • Ec: 3.2.1.23
    • 7:
      • @ref: 68382
      • Value: naphthol-AS-BI-phosphohydrolase
      • Activity: +
    • 8:
      • @ref: 68382
      • Value: alpha-galactosidase
      • Activity: -
      • Ec: 3.2.1.22
    • 9:
      • @ref: 68382
      • Value: acid phosphatase
      • Activity: +
      • Ec: 3.1.3.2
    • 10:
      • @ref: 68382
      • Value: alpha-chymotrypsin
      • Activity: +
      • Ec: 3.4.21.1
    • 11:
      • @ref: 68382
      • Value: trypsin
      • Activity: +
      • Ec: 3.4.21.4
    • 12:
      • @ref: 68382
      • Value: cystine arylamidase
      • Activity: -
      • Ec: 3.4.11.3
    • 13:
      • @ref: 68382
      • Value: valine arylamidase
      • Activity: -
    • 14:
      • @ref: 68382
      • Value: lipase (C 14)
      • Activity: -
    • 15:
      • @ref: 68382
      • Value: leucine arylamidase
      • Activity: +
      • Ec: 3.4.11.1
    • 16:
      • @ref: 68382
      • Value: esterase lipase (C 8)
      • Activity: +
    • 17:
      • @ref: 68382
      • Value: esterase (C 4)
      • Activity: +
    • 18:
      • @ref: 68382
      • Value: alkaline phosphatase
      • Activity: +
      • Ec: 3.1.3.1
    • 19:
      • @ref: 120690
      • Value: oxidase
      • Activity: +
    • 20:
      • @ref: 120690
      • Value: catalase
      • Activity: +
      • Ec: 1.11.1.6
    • 21:
      • @ref: 120690
      • Value: urease
      • Activity: -
      • Ec: 3.5.1.5
  • API zym:
    • @ref: 120690
    • Control: -
    • Alkaline phosphatase: +
    • Esterase: +
    • Esterase Lipase: +
    • Lipase: -
    • Leucine arylamidase: +
    • Valine arylamidase: -
    • Cystine arylamidase: -
    • Trypsin: +
    • Alpha- Chymotrypsin: +
    • Acid phosphatase: +
    • Naphthol-AS-BI-phosphohydrolase: +
    • Alpha- Galactosidase: -
    • Beta- Galactosidase: -
    • Beta- Glucuronidase: -
    • Alpha- Glucosidase: -
    • Beta- Glucosidase: -
    • N-acetyl-beta- glucosaminidase: -
    • Alpha- Mannosidase: -
    • Alpha- Fucosidase: -

  • Isolation:
    • 0:
      • @ref: 16734
      • Sample type: surface of soy sauce production equipment
      • Country: Japan
      • Origin.country: JPN
      • Continent: Asia
    • 1:
      • @ref: 67770
      • Sample type: Surface of soy sauce production equipment
      • Country: Japan
      • Origin.country: JPN
      • Continent: Asia
    • 2:
      • @ref: 120690
      • Sample type: Surface of equipment in food plant
      • Country: Japan
      • Origin.country: JPN
      • Continent: Asia
  • Isolation source categories:
    • 0:
      • Cat1: #Engineered
      • Cat2: #Food production
    • 1:
      • Cat1: #Engineered
      • Cat2: #Industrial
      • Cat3: #Engineered product
  • Taxonmaps:
    • @ref: 69479
    • File name: preview.99_15833.png
    • Url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_3;96_1276;97_1516;98_1846;99_15833&stattab=map
    • Last taxonomy: Sporosarcina luteola
    • 16S sequence: AB473560
    • Sequence Identity: None
    • Total samples: 2880
    • Soil counts: 1782
    • Aquatic counts: 258
    • Animal counts: 663
    • Plant counts: 177

  • Risk assessment:
    • 0:
      • @ref: 16734
      • Biosafety level: 1
      • Biosafety level comment: Risk group (German classification)
    • 1:
      • @ref: 120690
      • Biosafety level: 1
      • Biosafety level comment: Risk group (French classification)

  • 16S sequences:
    • 0:
      • @ref: 20218
      • Description: Sporosarcina luteola gene for 16S rRNA, partial sequence, strain: NBRC 105378
      • Accession: AB682252
      • Length: 1477
      • Database: nuccore
      • NCBI tax ID: 582850
    • 1:
      • @ref: 16734
      • Description: Sporosarcina luteola gene for 16S ribosomal RNA, partial sequence
      • Accession: AB473560
      • Length: 1507
      • Database: nuccore
      • NCBI tax ID: 582850
  • Genome sequences:
    • 0:
      • @ref: 66792
      • Description: Sporosarcina luteola NBRC 105378
      • Accession: GCA_007991495
      • Assembly level: contig
      • Database: ncbi
      • NCBI tax ID: 582850
    • 1:
      • @ref: 66792
      • Description: Sporosarcina luteola strain NBRC 105378
      • Accession: 582850.3
      • Assembly level: wgs
      • Database: patric
      • NCBI tax ID: 582850
  • GC content:
    • @ref: 16734
    • GC-content: 43.6
    • Method: high performance liquid chromatography (HPLC)

  • Key: 5136850743
  • DatasetKey: d80001c6-1c61-4e04-bf54-6359c7245423
  • PublishingOrgKey: 1bb096cc-5924-4844-8515-11e65e3655f9
  • InstallationKey: 49bdc91b-73fd-4af6-9dff-0701e6da82a5
  • HostingOrganizationKey: 299958e0-4c06-11d8-b290-b8a03c50a862
  • PublishingCountry: DK
  • Protocol: DWC_ARCHIVE
  • LastCrawled: 2025-06-03T00:57:47.491+00:00
  • LastParsed: 2025-06-03T01:15:11.270+00:00
  • CrawlId: 6
  • ProjectId: PRJNA1071982
  • Extensions:
    • Http://rs.gbif.org/terms/1.0/DNADerivedData:
      • 0:
        • Http://rs.gbif.org/terms/pcr primer name forward: MFD_16S_8F
        • Https://w3id.org/mixs/0000050: Pacbio SMRT Sequel IIe
        • Https://w3id.org/mixs/0000044: 16S
        • Http://rs.gbif.org/terms/miqe/annealingTemp: 60
        • Http://rs.gbif.org/terms/pcr primer name reverse: MFD_23S_2490R
        • Http://rs.gbif.org/terms/pcr primer reference: https://doi.org/10.1093/nar/gks808 | https://doi.org/10.1128/AEM.72.3.2221-2225.2006
        • Https://w3id.org/mixs/0000038: PCR
        • Http://rs.gbif.org/terms/miqe/amplificationReactionVolume: 50
        • Https://w3id.org/mixs/0000090: https://doi.org/10.1101/2024.06.27.600767
        • Http://rs.gbif.org/terms/pcr primer forward: AGRGTTYGATYMTGGCTCAG
        • Https://w3id.org/mixs/0000092: Microflora Danica
        • Https://w3id.org/mixs/0000087: https://zenodo.org/records/12605769
        • Https://w3id.org/mixs/0000041: Single
        • Http://rs.gbif.org/terms/miqe/annealingTempUnit: Degrees Celsius
        • Http://rs.gbif.org/terms/pcr primer reverse: CGACATCGAGGTGCCAAAC
    • Http://rs.iobis.org/obis/terms/ExtendedMeasurementOrFact:
      • 0:
        • Http://rs.tdwg.org/dwc/terms/measurementType: associated_bacterial_umi
      • 1:
        • Http://rs.tdwg.org/dwc/terms/measurementValue: SRX23627522
        • Http://rs.tdwg.org/dwc/terms/measurementType: associated_eukaryotic_operon
      • 2:
        • Http://rs.tdwg.org/dwc/terms/measurementValue: SRX23711696
        • Http://rs.tdwg.org/dwc/terms/measurementType: associated_metagenome
      • 3:
        • Http://rs.tdwg.org/dwc/terms/measurementValue: Yes
        • Http://rs.tdwg.org/dwc/terms/measurementType: coords_reliable
      • 4:
        • Http://rs.tdwg.org/dwc/terms/measurementValue: Natural
        • Http://rs.tdwg.org/dwc/terms/measurementType: mfd_areatype
      • 5:
        • Http://rs.tdwg.org/dwc/terms/measurementValue: Saltwater
        • Http://rs.tdwg.org/dwc/terms/measurementType: mfd_hab1
      • 6:
        • Http://rs.tdwg.org/dwc/terms/measurementValue: Fjords
        • Http://rs.tdwg.org/dwc/terms/measurementType: mfd_hab2
      • 7:
        • Http://rs.tdwg.org/dwc/terms/measurementType: mfd_hab3
      • 8:
        • Http://rs.tdwg.org/dwc/terms/measurementValue: Water
        • Http://rs.tdwg.org/dwc/terms/measurementType: mfd_sampletype
      • 9:
        • Http://rs.tdwg.org/dwc/terms/measurementValue: PRJNA1071982
        • Http://rs.tdwg.org/dwc/terms/measurementType: ncbiBioProject
      • 10:
        • Http://rs.tdwg.org/dwc/terms/measurementValue: skive fjord
        • Http://rs.tdwg.org/dwc/terms/measurementType: site_name
      • 11:
        • Http://rs.tdwg.org/dwc/terms/measurementValue: undefined
        • Http://rs.tdwg.org/dwc/terms/measurementType: species
  • BasisOfRecord: MATERIAL_SAMPLE
  • OccurrenceStatus: PRESENT
  • TaxonKey: 8171807
  • KingdomKey: 3
  • PhylumKey: 87
  • ClassKey: 303
  • OrderKey: 11130610
  • FamilyKey: 4707
  • GenusKey: 3228012
  • SpeciesKey: 8171807
  • AcceptedTaxonKey: 8171807
  • ScientificName: Sporosarcina luteola_A
  • AcceptedScientificName: Sporosarcina luteola_A
  • Kingdom: Bacteria
  • Phylum: Firmicutes
  • Order: Bacillales_A
  • Family: Planococcaceae
  • Genus: Sporosarcina
  • Species: Sporosarcina luteola
  • GenericName: Sporosarcina
  • SpecificEpithet: luteola
  • TaxonRank: SPECIES
  • TaxonomicStatus: ACCEPTED
  • DecimalLatitude: 56.5565
  • DecimalLongitude: 9.0763
  • Continent: EUROPE
  • Gadm:
    • Level0:
      • Gid: DNK
      • Name: Denmark
    • Level1:
      • Gid: DNK.2_1
      • Name: Midtjylland
    • Level2:
      • Gid: DNK.2.16_1
      • Name: Skive
  • Year: 2022
  • Month: 2
  • Day: 26
  • EventDate: 2022-02-26
  • StartDayOfYear: 57
  • EndDayOfYear: 57
  • Issues:
    • 0: COUNTRY_DERIVED_FROM_COORDINATES
    • 1: CONTINENT_DERIVED_FROM_COORDINATES
    • 2: TAXON_MATCH_FUZZY
    • 3: TAXON_MATCH_TAXON_ID_IGNORED
  • LastInterpreted: 2025-06-03T01:15:11.270+00:00
  • License: http://creativecommons.org/licenses/by/4.0/legalcode
  • OrganismQuantity: 3.0
  • OrganismQuantityType: DNA sequence reads
  • SampleSizeUnit: DNA sequence reads
  • SampleSizeValue: 34180.0
  • RelativeOrganismQuantity: 8.777062609713282e-05
  • IsSequenced: True
  • AssociatedSequences: https://www.ncbi.nlm.nih.gov/sra/SRX23627521
  • Identifiers:
    • 0:
      • Identifier: MFD09962:FLASV103576.1371
  • Media:
  • Facts:
  • Relations:
  • IsInCluster: False
  • SamplingProtocol: https://doi.org/10.1101/2024.06.27.600767
  • DnaSequenceID:
    • 0: None
  • GeodeticDatum: WGS84
  • Class: Bacilli
  • CountryCode: DK
  • RecordedByIDs:
  • IdentifiedByIDs:
  • GbifRegion: EUROPE
  • Country: Denmark
  • PublishedByGbifRegion: EUROPE
  • IdentificationReferences: https://doi.org/10.1101/2024.06.27.600767
  • EventID: MFD09962
  • Identifier: MFD09962:FLASV103576.1371
  • IdentificationRemarks: SINTAX annotation confidence: 0.80, against reference database: MFD 16S rRNA gene reference database
  • GbifID: 5136850743
  • MaterialSampleID: https://www.ncbi.nlm.nih.gov/biosample/SAMN39873971
  • OccurrenceID: MFD09962:FLASV103576.1371
  • TaxonID: ASV:d41d8cd98f00b204e9800998ecf8427e
  • VerbatimIdentification: d:,Bacteria,p:,Firmicutes,c:,Bacilli,o:,Bacillales,f:,Planococcaceae,g:,Sporosarcina,s:,Sporosarcina_luteola

  • Lineage: cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Bacillales; Caryophanaceae; Sporosarcina
  • LineageEx:
    • Taxon:
      • 0:
        • TaxId: 131567
        • ScientificName: cellular organisms
        • Rank: cellular root
      • 1:
        • TaxId: 2
        • ScientificName: Bacteria
        • Rank: domain
      • 2:
        • TaxId: 1783272
        • ScientificName: Bacillati
        • Rank: kingdom
      • 3:
        • TaxId: 1239
        • ScientificName: Bacillota
        • Rank: phylum
      • 4:
        • TaxId: 91061
        • ScientificName: Bacilli
        • Rank: class
      • 5:
        • TaxId: 1385
        • ScientificName: Bacillales
        • Rank: order
      • 6:
        • TaxId: 186818
        • ScientificName: Caryophanaceae
        • Rank: family
      • 7:
        • TaxId: 1569
        • ScientificName: Sporosarcina
        • Rank: genus