BioRepo | Biosample

Other Information

Cell morphology:
- @ref: 122119
- Gram stain: negative
- Cell shape: rod-shaped
- Motility: yes
Colony morphology:
- @ref: 9167
- Incubation period: 2-3 days

Culture medium:
- 0:
  - @ref: 37042
  - Name: MEDIUM 3 - Columbia agar
  - Growth: yes
  - Composition: Columbia agar (39.000 g);distilled water (1000.000 ml)
- 1:
  - @ref: 9167
  - Name: NUTRIENT AGAR (DSMZ Medium 1)
  - Growth: yes
  - Link: https://mediadive.dsmz.de/medium/1
  - Composition: Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
- 2:
  - @ref: 122119
  - Name: CIP Medium 3
  - Growth: yes
  - Link: https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3
- 3:
  - @ref: 122119
  - Name: CIP Medium 72
  - Growth: yes
  - Link: https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72
Culture temp:
- 0:
  - @ref: 37042
  - Growth: positive
  - Type: growth
  - Temperature: 30
- 1:
  - @ref: 9167
  - Growth: positive
  - Type: growth
  - Temperature: 30
- 2:
  - @ref: 44648
  - Growth: positive
  - Type: growth
  - Temperature: 37
- 3:
  - @ref: 67770
  - Growth: positive
  - Type: growth
  - Temperature: 25
- 4:
  - @ref: 122119
  - Growth: positive
  - Type: growth
  - Temperature: 30
- 5:
  - @ref: 122119
  - Growth: no
  - Type: growth
  - Temperature: 5
- 6:
  - @ref: 122119
  - Growth: no
  - Type: growth
  - Temperature: 10
- 7:
  - @ref: 122119
  - Growth: no
  - Type: growth
  - Temperature: 41

Oxygen tolerance:
- 0:
  - @ref: 44648
  - Oxygen tolerance: aerobe
- 1:
  - @ref: 122119
  - Oxygen tolerance: obligate aerobe
Metabolite utilization:
- 0:
  - @ref: 122119
  - Chebi-ID: 4853
  - Metabolite: esculin
  - Utilization activity: +
  - Kind of utilization tested: hydrolysis
- 1:
  - @ref: 122119
  - Chebi-ID: 17632
  - Metabolite: nitrate
  - Utilization activity: +
  - Kind of utilization tested: reduction
- 2:
  - @ref: 122119
  - Chebi-ID: 16301
  - Metabolite: nitrite
  - Utilization activity: +
  - Kind of utilization tested: reduction
- 3:
  - @ref: 122119
  - Chebi-ID: 132112
  - Metabolite: sodium thiosulfate
  - Utilization activity: +
  - Kind of utilization tested: builds gas from
- 4:
  - @ref: 122119
  - Chebi-ID: 17234
  - Metabolite: glucose
  - Utilization activity: +/-
  - Kind of utilization tested: degradation
- 5:
  - @ref: 68371
  - Metabolite: Potassium 5-ketogluconate
  - Utilization activity: -
  - Kind of utilization tested: builds acid from
- 6:
  - @ref: 68371
  - Chebi-ID: 18305
  - Metabolite: arbutin
  - Utilization activity: -
  - Kind of utilization tested: builds acid from
- 7:
  - @ref: 68371
  - Chebi-ID: 27613
  - Metabolite: amygdalin
  - Utilization activity: -
  - Kind of utilization tested: builds acid from
- 8:
  - @ref: 68371
  - Metabolite: Potassium 2-ketogluconate
  - Utilization activity: -
  - Kind of utilization tested: builds acid from
- 9:
  - @ref: 68371
  - Chebi-ID: 24265
  - Metabolite: gluconate
  - Utilization activity: -
  - Kind of utilization tested: builds acid from
- 10:
  - @ref: 68371
  - Chebi-ID: 18403
  - Metabolite: L-arabitol
  - Utilization activity: -
  - Kind of utilization tested: builds acid from
- 11:
  - @ref: 68371
  - Chebi-ID: 18333
  - Metabolite: D-arabitol
  - Utilization activity: -
  - Kind of utilization tested: builds acid from
- 12:
  - @ref: 68371
  - Chebi-ID: 18287
  - Metabolite: L-fucose
  - Utilization activity: +
  - Kind of utilization tested: builds acid from
- 13:
  - @ref: 68371
  - Chebi-ID: 28847
  - Metabolite: D-fucose
  - Utilization activity: +
  - Kind of utilization tested: builds acid from
- 14:
  - @ref: 68371
  - Chebi-ID: 16443
  - Metabolite: D-tagatose
  - Utilization activity: -
  - Kind of utilization tested: builds acid from
- 15:
  - @ref: 68371
  - Chebi-ID: 62318
  - Metabolite: D-lyxose
  - Utilization activity: +
  - Kind of utilization tested: builds acid from
- 16:
  - @ref: 68371
  - Chebi-ID: 32528
  - Metabolite: turanose
  - Utilization activity: -
  - Kind of utilization tested: builds acid from
- 17:
  - @ref: 68371
  - Chebi-ID: 28066
  - Metabolite: gentiobiose
  - Utilization activity: -
  - Kind of utilization tested: builds acid from
- 18:
  - @ref: 68371
  - Chebi-ID: 17151
  - Metabolite: xylitol
  - Utilization activity: -
  - Kind of utilization tested: builds acid from
- 19:
  - @ref: 68371
  - Chebi-ID: 28087
  - Metabolite: glycogen
  - Utilization activity: -
  - Kind of utilization tested: builds acid from
- 20:
  - @ref: 68371
  - Chebi-ID: 28017
  - Metabolite: starch
  - Utilization activity: -
  - Kind of utilization tested: builds acid from
- 21:
  - @ref: 68371
  - Chebi-ID: 16634
  - Metabolite: raffinose
  - Utilization activity: -
  - Kind of utilization tested: builds acid from
- 22:
  - @ref: 68371
  - Chebi-ID: 6731
  - Metabolite: melezitose
  - Utilization activity: -
  - Kind of utilization tested: builds acid from
- 23:
  - @ref: 68371
  - Chebi-ID: 15443
  - Metabolite: inulin
  - Utilization activity: -
  - Kind of utilization tested: builds acid from
- 24:
  - @ref: 68371
  - Chebi-ID: 28053
  - Metabolite: melibiose
  - Utilization activity: -
  - Kind of utilization tested: builds acid from
- 25:
  - @ref: 68371
  - Chebi-ID: 17716
  - Metabolite: lactose
  - Utilization activity: -
  - Kind of utilization tested: builds acid from
- 26:
  - @ref: 68371
  - Chebi-ID: 17306
  - Metabolite: maltose
  - Utilization activity: -
  - Kind of utilization tested: builds acid from
- 27:
  - @ref: 68371
  - Chebi-ID: 17057
  - Metabolite: cellobiose
  - Utilization activity: -
  - Kind of utilization tested: builds acid from
- 28:
  - @ref: 68371
  - Chebi-ID: 17814
  - Metabolite: salicin
  - Utilization activity: -
  - Kind of utilization tested: builds acid from
- 29:
  - @ref: 68371
  - Chebi-ID: 4853
  - Metabolite: esculin
  - Utilization activity: -
  - Kind of utilization tested: builds acid from
- 30:
  - @ref: 68371
  - Chebi-ID: 59640
  - Metabolite: N-acetylglucosamine
  - Utilization activity: -
  - Kind of utilization tested: builds acid from
- 31:
  - @ref: 68371
  - Chebi-ID: 43943
  - Metabolite: methyl alpha-D-mannoside
  - Utilization activity: -
  - Kind of utilization tested: builds acid from
- 32:
  - @ref: 68371
  - Chebi-ID: 17924
  - Metabolite: D-sorbitol
  - Utilization activity: -
  - Kind of utilization tested: builds acid from
- 33:
  - @ref: 68371
  - Chebi-ID: 16899
  - Metabolite: D-mannitol
  - Utilization activity: -
  - Kind of utilization tested: builds acid from
- 34:
  - @ref: 68371
  - Chebi-ID: 17268
  - Metabolite: myo-inositol
  - Utilization activity: -
  - Kind of utilization tested: builds acid from
- 35:
  - @ref: 68371
  - Chebi-ID: 16813
  - Metabolite: galactitol
  - Utilization activity: -
  - Kind of utilization tested: builds acid from
- 36:
  - @ref: 68371
  - Chebi-ID: 62345
  - Metabolite: L-rhamnose
  - Utilization activity: -
  - Kind of utilization tested: builds acid from
- 37:
  - @ref: 68371
  - Chebi-ID: 17266
  - Metabolite: L-sorbose
  - Utilization activity: -
  - Kind of utilization tested: builds acid from
- 38:
  - @ref: 68371
  - Chebi-ID: 16024
  - Metabolite: D-mannose
  - Utilization activity: -
  - Kind of utilization tested: builds acid from
- 39:
  - @ref: 68371
  - Chebi-ID: 15824
  - Metabolite: D-fructose
  - Utilization activity: -
  - Kind of utilization tested: builds acid from
- 40:
  - @ref: 68371
  - Chebi-ID: 17634
  - Metabolite: D-glucose
  - Utilization activity: -
  - Kind of utilization tested: builds acid from
- 41:
  - @ref: 68371
  - Chebi-ID: 12936
  - Metabolite: D-galactose
  - Utilization activity: -
  - Kind of utilization tested: builds acid from
- 42:
  - @ref: 68371
  - Chebi-ID: 65328
  - Metabolite: L-xylose
  - Utilization activity: -
  - Kind of utilization tested: builds acid from
- 43:
  - @ref: 68371
  - Chebi-ID: 17108
  - Metabolite: D-arabinose
  - Utilization activity: -
  - Kind of utilization tested: builds acid from
- 44:
  - @ref: 68371
  - Chebi-ID: 17113
  - Metabolite: erythritol
  - Utilization activity: -
  - Kind of utilization tested: builds acid from
- 45:
  - @ref: 68371
  - Chebi-ID: 17754
  - Metabolite: glycerol
  - Utilization activity: -
  - Kind of utilization tested: builds acid from
- 46:
  - @ref: 68369
  - Chebi-ID: 25115
  - Metabolite: malate
  - Utilization activity: +
  - Kind of utilization tested: assimilation
- 47:
  - @ref: 68369
  - Chebi-ID: 27689
  - Metabolite: decanoate
  - Utilization activity: -
  - Kind of utilization tested: assimilation
- 48:
  - @ref: 68369
  - Chebi-ID: 24265
  - Metabolite: gluconate
  - Utilization activity: +
  - Kind of utilization tested: assimilation
- 49:
  - @ref: 68369
  - Chebi-ID: 17306
  - Metabolite: maltose
  - Utilization activity: +
  - Kind of utilization tested: assimilation
- 50:
  - @ref: 68369
  - Chebi-ID: 59640
  - Metabolite: N-acetylglucosamine
  - Utilization activity: +
  - Kind of utilization tested: assimilation
- 51:
  - @ref: 68369
  - Chebi-ID: 16899
  - Metabolite: D-mannitol
  - Utilization activity: +
  - Kind of utilization tested: assimilation
- 52:
  - @ref: 68369
  - Chebi-ID: 16024
  - Metabolite: D-mannose
  - Utilization activity: +
  - Kind of utilization tested: assimilation
- 53:
  - @ref: 68369
  - Chebi-ID: 30849
  - Metabolite: L-arabinose
  - Utilization activity: +
  - Kind of utilization tested: assimilation
- 54:
  - @ref: 68369
  - Chebi-ID: 17634
  - Metabolite: D-glucose
  - Utilization activity: +
  - Kind of utilization tested: assimilation
- 55:
  - @ref: 68369
  - Chebi-ID: 5291
  - Metabolite: gelatin
  - Utilization activity: -
  - Kind of utilization tested: hydrolysis
- 56:
  - @ref: 68369
  - Chebi-ID: 4853
  - Metabolite: esculin
  - Utilization activity: +
  - Kind of utilization tested: hydrolysis
- 57:
  - @ref: 68369
  - Chebi-ID: 16199
  - Metabolite: urea
  - Utilization activity: +
  - Kind of utilization tested: hydrolysis
- 58:
  - @ref: 68369
  - Chebi-ID: 29016
  - Metabolite: arginine
  - Utilization activity: -
  - Kind of utilization tested: hydrolysis
- 59:
  - @ref: 68369
  - Chebi-ID: 17634
  - Metabolite: D-glucose
  - Utilization activity: -
  - Kind of utilization tested: fermentation
- 60:
  - @ref: 68369
  - Chebi-ID: 27897
  - Metabolite: tryptophan
  - Utilization activity: -
  - Kind of utilization tested: energy source
Antibiotic resistance:
- @ref: 122119
- Metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
- Is antibiotic: yes
- Is sensitive: no
- Is resistant: yes
Metabolite production:
- 0:
  - @ref: 68369
  - Chebi-ID: 35581
  - Metabolite: indole
  - Production: no
- 1:
  - @ref: 122119
  - Chebi-ID: 35581
  - Metabolite: indole
  - Production: no
Metabolite tests:
- @ref: 68369
- Chebi-ID: 35581
- Metabolite: indole
- Indole test: -
Enzymes:
- 0:
  - @ref: 9167
  - Value: catalase
  - Activity: +
  - Ec: 1.11.1.6
- 1:
  - @ref: 9167
  - Value: cytochrome-c oxidase
  - Activity: +
  - Ec: 1.9.3.1
- 2:
  - @ref: 68382
  - Value: alpha-mannosidase
  - Activity: -
  - Ec: 3.2.1.24
- 3:
  - @ref: 68382
  - Value: alpha-fucosidase
  - Activity: -
  - Ec: 3.2.1.51
- 4:
  - @ref: 68382
  - Value: beta-glucuronidase
  - Activity: -
  - Ec: 3.2.1.31
- 5:
  - @ref: 68382
  - Value: beta-galactosidase
  - Activity: -
  - Ec: 3.2.1.23
- 6:
  - @ref: 68382
  - Value: alpha-galactosidase
  - Activity: -
  - Ec: 3.2.1.22
- 7:
  - @ref: 68382
  - Value: naphthol-AS-BI-phosphohydrolase
  - Activity: -
- 8:
  - @ref: 68382
  - Value: alpha-chymotrypsin
  - Activity: -
  - Ec: 3.4.21.1
- 9:
  - @ref: 68382
  - Value: acid phosphatase
  - Activity: -
  - Ec: 3.1.3.2
- 10:
  - @ref: 68382
  - Value: trypsin
  - Activity: +
  - Ec: 3.4.21.4
- 11:
  - @ref: 68382
  - Value: leucine arylamidase
  - Activity: +
  - Ec: 3.4.11.1
- 12:
  - @ref: 122119
  - Value: oxidase
  - Activity: +
- 13:
  - @ref: 122119
  - Value: beta-galactosidase
  - Activity: +
  - Ec: 3.2.1.23
- 14:
  - @ref: 122119
  - Value: alcohol dehydrogenase
  - Activity: -
  - Ec: 1.1.1.1
- 15:
  - @ref: 122119
  - Value: gelatinase
  - Activity: -
- 16:
  - @ref: 122119
  - Value: DNase
  - Activity: -
- 17:
  - @ref: 122119
  - Value: caseinase
  - Activity: -
  - Ec: 3.4.21.50
- 18:
  - @ref: 122119
  - Value: catalase
  - Activity: +
  - Ec: 1.11.1.6
- 19:
  - @ref: 122119
  - Value: tween esterase
  - Activity: +
- 20:
  - @ref: 122119
  - Value: lecithinase
  - Activity: -
- 21:
  - @ref: 122119
  - Value: lysine decarboxylase
  - Activity: -
  - Ec: 4.1.1.18
- 22:
  - @ref: 122119
  - Value: ornithine decarboxylase
  - Activity: -
  - Ec: 4.1.1.17
- 23:
  - @ref: 122119
  - Value: urease
  - Activity: +
  - Ec: 3.5.1.5
- 24:
  - @ref: 68369
  - Value: cytochrome oxidase
  - Activity: +
  - Ec: 1.9.3.1
- 25:
  - @ref: 68369
  - Value: gelatinase
  - Activity: -
- 26:
  - @ref: 68369
  - Value: beta-glucosidase
  - Activity: +
  - Ec: 3.2.1.21
- 27:
  - @ref: 68369
  - Value: urease
  - Activity: +
  - Ec: 3.5.1.5
- 28:
  - @ref: 68369
  - Value: arginine dihydrolase
  - Activity: -
  - Ec: 3.5.3.6
API zym:
- 0:
  - @ref: 9167
  - Control: -
  - Alkaline phosphatase: +/-
  - Esterase: -
  - Esterase Lipase: -
  - Lipase: -
  - Leucine arylamidase: +
  - Valine arylamidase: +/-
  - Cystine arylamidase: -
  - Trypsin: +
  - Alpha- Chymotrypsin: -
  - Acid phosphatase: -
  - Naphthol-AS-BI-phosphohydrolase: -
  - Alpha- Galactosidase: -
  - Beta- Galactosidase: -
  - Beta- Glucuronidase: -
  - Alpha- Glucosidase: +
  - Beta- Glucosidase: +/-
  - N-acetyl-beta- glucosaminidase: +
  - Alpha- Mannosidase: -
  - Alpha- Fucosidase: -
- 1:
  - @ref: 122119
  - Control: -
  - Alkaline phosphatase: +
  - Esterase: +
  - Esterase Lipase: +
  - Lipase: +
  - Leucine arylamidase: +
  - Valine arylamidase: +
  - Cystine arylamidase: +
  - Trypsin: +
  - Alpha- Chymotrypsin: -
  - Acid phosphatase: -
  - Naphthol-AS-BI-phosphohydrolase: -
  - Alpha- Galactosidase: -
  - Beta- Galactosidase: -
  - Beta- Glucuronidase: -
  - Alpha- Glucosidase: -
  - Beta- Glucosidase: -
  - N-acetyl-beta- glucosaminidase: -
  - Alpha- Mannosidase: -
  - Alpha- Fucosidase: -
API 20NE:
- 0:
  - @ref: 9167
  - NO3: +/-
  - TRP: -
  - GLU Ferm: -
  - ADH Arg: -
  - URE: +
  - ESC: +
  - GEL: -
  - PNPG: +
  - GLU Assim: +
  - ARA: +
  - MNE: +
  - MAN: +
  - NAG: +
  - MAL: +
  - GNT: +
  - CAP: -
  - ADI: +/-
  - MLT: +
  - CIT: -
  - PAC: -
- 1:
  - @ref: 9167
  - NO3: -
  - TRP: -
  - GLU Ferm: -
  - ADH Arg: -
  - URE: +
  - ESC: +
  - GEL: -
  - PNPG: +
  - GLU Assim: +
  - ARA: +
  - MNE: +
  - MAN: +
  - NAG: +
  - MAL: +
  - GNT: +
  - CAP: -
  - ADI: -
  - MLT: +
  - CIT: -
  - PAC: -
  - OX: +
- 2:
  - @ref: 9167
  - NO3: +
  - TRP: -
  - GLU Ferm: -
  - ADH Arg: -
  - URE: +
  - ESC: +
  - GEL: -
  - PNPG: +
  - GLU Assim: +
  - ARA: +
  - MNE: +
  - MAN: +
  - NAG: +
  - MAL: +
  - GNT: +
  - CAP: -
  - ADI: -
  - MLT: +
  - CIT: -
  - PAC: -
  - OX: +
- 3:
  - @ref: 9167
  - NO3: -
  - TRP: -
  - GLU Ferm: -
  - ADH Arg: -
  - URE: +
  - ESC: +
  - GEL: -
  - PNPG: +
  - GLU Assim: +
  - ARA: +
  - MNE: +
  - MAN: +
  - NAG: +
  - MAL: +
  - GNT: +
  - CAP: -
  - ADI: +/-
  - MLT: +
  - CIT: -
  - PAC: -
  - OX: +
API 50CHac:
- @ref: 122119
- GLY: -
- ERY: -
- DARA: -
- LARA: +/-
- RIB: +/-
- DXYL: +/-
- LXYL: -
- ADO: +/-
- MDX: +/-
- GAL: -
- GLU: -
- FRU: -
- MNE: -
- SBE: -
- RHA: -
- DUL: -
- INO: -
- MAN: -
- SOR: -
- MDM: -
- MDG: +/-
- NAG: -
- AMY: -
- ARB: -
- ESC: -
- SAL: -
- CEL: -
- MAL: -
- LAC: -
- MEL: -
- SAC: +/-
- TRE: +/-
- INU: -
- MLZ: -
- RAF: -
- AMD: -
- GLYG: -
- XLT: -
- GEN: -
- TUR: -
- LYX: +
- TAG: -
- DFUC: +
- LFUC: +
- DARL: -
- LARL: -
- GNT: -
- 2KG: -
- 5KG: -
API biotype100:
- @ref: 122119
- GLU: +
- FRU: +
- GAL: +
- TRE: +
- MNE: +
- SBE: -
- MEL: +
- SAC: +
- RAF: +
- MTE: +
- MAL: +
- LAC: +
- LTE: +
- MbGa: +
- MaGa: +
- CEL: +
- GEN: +
- MbGu: +
- ESC: +
- RIB: +
- ARA: +
- XYL: +
- PLE: +
- RHA: +
- FUC: +
- MLZ: +
- DARL: +
- LARL: +
- XLT: +
- DUL: +
- TAG: +
- GLY: +
- INO: +
- MAN: +
- MTL: +
- TUR: +
- SOR: +
- ADO: +
- HBG: -
- LYX: +
- ERY: -
- MDG: +
- 3MDG: -
- SAT: -
- MUC: -
- LTAT: -
- DTAT: -
- MTAT: -
- DMLT: +
- LMLT: +
- CATE: -
- TATE: +
- TTE: -
- CIT: -
- GRT: +
- GAT: +
- 2KG: +
- 5KG: -
- TRY: -
- NAG: +
- GNT: +
- PAC: -
- PAT: +
- POBE: +
- QAT: +
- GTE: -
- MOBE: -
- BAT: -
- PPAT: -
- CMT: -
- TGE: -
- BET: +
- PCE: -
- ABT: +
- HIN: -
- LAT: +
- CAP: -
- CYT: -
- HIS: -
- SUC: +
- FUM: +
- GRE: -
- GYT: -
- AVT: -
- ETN: -
- TTN: -
- GLN: +
- ITA: -
- 3OBU: +
- APT: +
- GTT: +
- PRO: +
- DALA: -
- LALA: +
- SER: -
- MNT: -
- PROP: +
- TYR: -
- 2KT: -

Isolation:
- @ref: 44648
- Sample type: Ditch water
Isolation source categories:
- 0:
  - Cat1: #Environmental
  - Cat2: #Aquatic
  - Cat3: #Freshwater
- 1:
  - Cat1: #Engineered
  - Cat2: #Built environment
Taxonmaps:
- @ref: 69479
- File name: preview.99_6.png
- Url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_5;96_6;97_6;98_6;99_6&stattab=map
- Last taxonomy: Agrobacterium
- 16S sequence: AM181758
- Sequence Identity: None
- Total samples: 5894
- Soil counts: 595
- Aquatic counts: 822
- Animal counts: 3746
- Plant counts: 731

Risk assessment:
- 0:
  - @ref: 9167
  - Pathogenicity human: yes, in single cases
  - Pathogenicity plant: yes
  - Biosafety level: 1
  - Biosafety level comment: Risk group (German classification)
- 1:
  - @ref: 122119
  - Biosafety level: 1
  - Biosafety level comment: Risk group (French classification)

16S sequences:
- 0:
  - @ref: 20218
  - Description: Agrobacterium radiobacter 16S rRNA gene, strain ATCC19358
  - Accession: AJ389904
  - Length: 1437
  - Database: nuccore
  - NCBI tax ID: 358
- 1:
  - @ref: 20218
  - Description: Agrobacterium tumefaciens strain LMG 140 16S ribosomal RNA gene, partial sequence; internal transcribed spacer, complete sequence and 23S ribosomal RNA gene, partial sequence
  - Accession: AF541973
  - Length: 1086
  - Database: nuccore
  - NCBI tax ID: 358
- 2:
  - @ref: 20218
  - Description: Agrobacterium radiobacter partial 16S rRNA gene, strain LMG 140
  - Accession: AM181758
  - Length: 1426
  - Database: nuccore
  - NCBI tax ID: 358
- 3:
  - @ref: 20218
  - Description: Agrobacterium tumefaciens gene for 16S rRNA, partial sequence, strain: NBRC 13532
  - Accession: AB680423
  - Length: 1410
  - Database: nuccore
  - NCBI tax ID: 358
- 4:
  - @ref: 9167
  - Description: Agrobacterium tumefaciens genes for 16S rRNA, tRNA-Ile, tRNA-Ala, 23S rRNA 150-b fragment, IVS, 23S rRNA 1.3-kb fragment A, partial and complete sequence, strain: IAM 12048
  - Accession: AB247615
  - Length: 2738
  - Database: nuccore
  - NCBI tax ID: 358
- 5:
  - @ref: 124043
  - Description: Agrobacterium radiobacter DSM 30147 partial 16S rRNA gene, isolate N-67
  - Accession: LS999519
  - Length: 1350
  - Database: nuccore
  - NCBI tax ID: 1336745
Genome sequences:
- 0:
  - @ref: 66792
  - Description: Agrobacterium radiobacter DSM 30147
  - Accession: 1336745.4
  - Assembly level: wgs
  - Database: patric
  - NCBI tax ID: 1336745
- 1:
  - @ref: 66792
  - Description: Agrobacterium tumefaciens strain CCUG 3354
  - Accession: 358.266
  - Assembly level: wgs
  - Database: patric
  - NCBI tax ID: 358
- 2:
  - @ref: 66792
  - Description: Agrobacterium tumefaciens strain LMG 140
  - Accession: 358.128
  - Assembly level: wgs
  - Database: patric
  - NCBI tax ID: 358
- 3:
  - @ref: 66792
  - Description: Agrobacterium tumefaciens strain NCIB 9042
  - Accession: 358.277
  - Assembly level: wgs
  - Database: patric
  - NCBI tax ID: 358
- 4:
  - @ref: 66792
  - Description: Agrobacterium tumefaciens strain NCPPB 3001
  - Accession: 358.72
  - Assembly level: wgs
  - Database: patric
  - NCBI tax ID: 358
- 5:
  - @ref: 66792
  - Description: Agrobacterium radiobacter DSM 30147
  - Accession: 2571042120
  - Assembly level: draft
  - Database: img
  - NCBI tax ID: 1336745
- 6:
  - @ref: 66792
  - Description: Agrobacterium tumefaciens LMG 140
  - Accession: 2868989325
  - Assembly level: draft
  - Database: img
  - NCBI tax ID: 358
- 7:
  - @ref: 66792
  - Description: Agrobacterium sp. NCIB 9042
  - Accession: 2916111912
  - Assembly level: draft
  - Database: img
  - NCBI tax ID: 2756240
- 8:
  - @ref: 67770
  - Description: Agrobacterium radiobacter DSM 30147
  - Accession: GCA_000421945
  - Assembly level: contig
  - Database: ncbi
  - NCBI tax ID: 1336745
- 9:
  - @ref: 67770
  - Description: Agrobacterium sp. NCIB 9042
  - Accession: GCA_011684005
  - Assembly level: contig
  - Database: ncbi
  - NCBI tax ID: 2756240
- 10:
  - @ref: 67770
  - Description: Agrobacterium tumefaciens NCPPB 3001
  - Accession: GCA_001541305
  - Assembly level: contig
  - Database: ncbi
  - NCBI tax ID: 358
- 11:
  - @ref: 67770
  - Description: Agrobacterium tumefaciens LMG 140
  - Accession: GCA_002008215
  - Assembly level: contig
  - Database: ncbi
  - NCBI tax ID: 358
- 12:
  - @ref: 67770
  - Description: Agrobacterium tumefaciens CCUG 3354
  - Accession: GCA_008801385
  - Assembly level: contig
  - Database: ncbi
  - NCBI tax ID: 358

Key: 5006534975
DatasetKey: 8a863029-f435-446a-821e-275f4f641165
PublishingOrgKey: c8d737e0-2ff8-42e8-b8fc-6b805d26fc5f
InstallationKey: a0e05292-3d09-4eae-9f83-02ae3516283c
HostingOrganizationKey: c8d737e0-2ff8-42e8-b8fc-6b805d26fc5f
PublishingCountry: NL
Protocol: DWC_ARCHIVE
LastCrawled: 2025-07-01T18:22:12.617+00:00
LastParsed: 2025-07-01T23:28:44.355+00:00
CrawlId: 156
Extensions:
- Http://rs.tdwg.org/ac/terms/Multimedia:
  - 0:
    - Http://rs.tdwg.org/ac/terms/accessURI: https://observation.org/photos/109953128.jpg
    - Http://purl.org/dc/terms/identifier: https://observation.org/photos/109953128
    - Http://ns.adobe.com/xap/1.0/rights/Owner: Willemein
    - Http://purl.org/dc/elements/1.1/type: StillImage
    - Http://purl.org/dc/elements/1.1/format: image/jpeg
    - Http://purl.org/dc/elements/1.1/rights: http://creativecommons.org/licenses/by-nc-nd/4.0/legalcode
    - Http://rs.tdwg.org/ac/terms/variantLiteral: Best Quality
    - Http://purl.org/dc/elements/1.1/creator: Willemein
BasisOfRecord: HUMAN_OBSERVATION
IndividualCount: 3
OccurrenceStatus: PRESENT
TaxonKey: 11339291
KingdomKey: 3
PhylumKey: 111
ClassKey: 197
OrderKey: 1221
FamilyKey: 7818
GenusKey: 3220724
SpeciesKey: 11339291
AcceptedTaxonKey: 11339291
ScientificName: Agrobacterium tumefaciens_H
AcceptedScientificName: Agrobacterium tumefaciens_H
Kingdom: Bacteria
Phylum: Proteobacteria
Order: Rhizobiales
Family: Rhizobiaceae
Genus: Agrobacterium
Species: Agrobacterium tumefaciens
GenericName: Agrobacterium
SpecificEpithet: tumefaciens
TaxonRank: SPECIES
TaxonomicStatus: ACCEPTED
DecimalLatitude: 52.0
DecimalLongitude: 4.3
CoordinateUncertaintyInMeters: 5000.0
Continent: EUROPE
StateProvince: Zuid-Holland
Gadm:
- Level0:
  - Gid: NLD
  - Name: Netherlands
- Level1:
  - Gid: NLD.14_1
  - Name: Zuid-Holland
- Level2:
  - Gid: NLD.14.99_1
  - Name: Midden-Delfland
Year: 2025
Month: 1
Day: 1
EventDate: 2025-01-01
StartDayOfYear: 1
EndDayOfYear: 1
Issues:
Modified: 2025-01-05T04:34:00.000+00:00
LastInterpreted: 2025-07-01T23:28:44.355+00:00
License: http://creativecommons.org/licenses/by-nc/4.0/legalcode
IsSequenced: False
Identifiers:
- 0:
  - Identifier: 336256071
Media:
- 0:
  - Type: StillImage
  - Format: image/jpeg
  - Creator: Willemein
  - License: http://creativecommons.org/licenses/by-nc-nd/4.0/
  - RightsHolder: Willemein
  - Identifier: https://observation.org/photos/109953128.jpg
Facts:
Relations:
IsInCluster: False
RecordedBy: User 151437
SamplingProtocol: field observation
DnaSequenceID:
GeodeticDatum: WGS84
Class: Alphaproteobacteria
CountryCode: NL
RecordedByIDs:
IdentifiedByIDs:
GbifRegion: EUROPE
Country: Netherlands
PublishedByGbifRegion: EUROPE
RightsHolder: Stichting Observation International
Identifier: 336256071
Habitat: unknown
DataGeneralizations: WGS84 coordinates generalized with formula: `coord = floor(coord * 20) / 20`
EventTime: 15:05
Locality: Den Hoorn (ZH) - Harnaschpolder
IdentificationVerificationStatus: Approved | Expert | Evidence
GbifID: 5006534975
EventType: Observation
OccurrenceID: https://observation.org/observation/336256071

Lineage: cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex
LineageEx:
- Taxon:
  - 0:
    - TaxId: 131567
    - ScientificName: cellular organisms
    - Rank: cellular root
  - 1:
    - TaxId: 2
    - ScientificName: Bacteria
    - Rank: domain
  - 2:
    - TaxId: 3379134
    - ScientificName: Pseudomonadati
    - Rank: kingdom
  - 3:
    - TaxId: 1224
    - ScientificName: Pseudomonadota
    - Rank: phylum
  - 4:
    - TaxId: 28211
    - ScientificName: Alphaproteobacteria
    - Rank: class
  - 5:
    - TaxId: 356
    - ScientificName: Hyphomicrobiales
    - Rank: order
  - 6:
    - TaxId: 82115
    - ScientificName: Rhizobiaceae
    - Rank: family
  - 7:
    - TaxId: 227290
    - ScientificName: Rhizobium/Agrobacterium group
    - Rank: no rank
  - 8:
    - TaxId: 357
    - ScientificName: Agrobacterium
    - Rank: genus
  - 9:
    - TaxId: 1183400
    - ScientificName: Agrobacterium tumefaciens complex
    - Rank: species group

General Information

Sample Information

Other Information

General Information

Sample Information

Other Information

Morphology

Culture and growth conditions

Physiology and metabolism

Isolation, sampling and environmental information

Safety information

Sequence information

Occurence (geoference records)

Name and taxonomic classification