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General Information
Title Inacc No : InaCC B57, Scientific Name: Sporosarcina luteola
Organism Sporosarcina luteola
Sample Type Microbe
Description
External Links
Description URL
None

Sample Information
Sample Attribute
Sample Name InaCC B57
Sample Title Inacc No : InaCC B57, Scientific Name: Sporosarcina luteola
Description
Taxonomy ID 582850
Bioproject Id
Locus Tag Prefix
Strain Sporosarcina luteola
Isolate
Isolation Source Soil
Host
Lab Host
Biomaterial Provider
Sample Type cell culture
Collection Date N/A
Geographic Location Name Indonesia:South East Sulawesi, Protected Forest Mekongga, Tinukari, North Kolaka
Latitude Longitude
Environmental Biome
Depth
Altitude
Collected By Agustinus Joko N
Culture Collection Indonesian Culture Collection (InaCC) B57
Genotype
Host Tissue Sampled
Identified By
Mating Type
Passage History
Sample Size
Serotype
Serovar
Specimen Voucher
Temperature 30
Organism 3123
Growth Media NA/TSA
Center Direktorat Pengelolaan Laboratorium, Fasilitas Riset, dan Kawasan Sains dan Teknologi
Lab Pusat Sekuensing
Submitter Lab Pusat Sekuensing - BRIN
Submitted at 27-09-2024
Published at 30-09-2024

Other Information

  • Cell morphology:
    • @ref: 120690
    • Gram stain: positive
    • Cell shape: rod-shaped
    • Motility: yes

  • Culture medium:
    • 0:
      • @ref: 16734
      • Name: BHI MEDIUM (DSMZ Medium 215)
      • Growth: yes
      • Link: https://mediadive.dsmz.de/medium/215
      • Composition: Name: BHI MEDIUM (DSMZ Medium 215; with strain-specific modifications) Composition: Brain heart infusion 37.0 g/l MnSO4 Distilled water
    • 1:
      • @ref: 16734
      • Name: CASO AGAR (MERCK 105458) (DSMZ Medium 220)
      • Growth: yes
      • Link: https://mediadive.dsmz.de/medium/220
      • Composition: Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water
    • 2:
      • @ref: 33338
      • Name: MEDIUM 29- Brain heart agar
      • Growth: yes
      • Composition: Distilled water make up to (1000.000 ml);Brain heart infusion agar (52.000 g)
    • 3:
      • @ref: 120690
      • Name: CIP Medium 29
      • Growth: yes
      • Link: https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=29
  • Culture temp:
    • 0:
      • @ref: 16734
      • Growth: positive
      • Type: growth
      • Temperature: 30
    • 1:
      • @ref: 33338
      • Growth: positive
      • Type: growth
      • Temperature: 30
    • 2:
      • @ref: 67770
      • Growth: positive
      • Type: growth
      • Temperature: 30

  • Oxygen tolerance:
    • @ref: 120690
    • Oxygen tolerance: obligate aerobe
  • Murein:
    • @ref: 16734
    • Murein short key: A11.33
    • Type: A4alpha L-Lys-D-Glu
  • Observation:
    • @ref: 67770
    • Observation: quinones: MK-7
  • Metabolite utilization:
    • 0:
      • @ref: 120690
      • Chebi-ID: 17632
      • Metabolite: nitrate
      • Utilization activity: +
      • Kind of utilization tested: reduction
    • 1:
      • @ref: 120690
      • Chebi-ID: 16301
      • Metabolite: nitrite
      • Utilization activity: -
      • Kind of utilization tested: reduction
  • Metabolite production:
    • @ref: 120690
    • Chebi-ID: 35581
    • Metabolite: indole
    • Production: no
  • Enzymes:
    • 0:
      • @ref: 68382
      • Value: alpha-fucosidase
      • Activity: -
      • Ec: 3.2.1.51
    • 1:
      • @ref: 68382
      • Value: alpha-mannosidase
      • Activity: -
      • Ec: 3.2.1.24
    • 2:
      • @ref: 68382
      • Value: N-acetyl-beta-glucosaminidase
      • Activity: -
      • Ec: 3.2.1.52
    • 3:
      • @ref: 68382
      • Value: beta-glucosidase
      • Activity: -
      • Ec: 3.2.1.21
    • 4:
      • @ref: 68382
      • Value: alpha-glucosidase
      • Activity: -
      • Ec: 3.2.1.20
    • 5:
      • @ref: 68382
      • Value: beta-glucuronidase
      • Activity: -
      • Ec: 3.2.1.31
    • 6:
      • @ref: 68382
      • Value: beta-galactosidase
      • Activity: -
      • Ec: 3.2.1.23
    • 7:
      • @ref: 68382
      • Value: naphthol-AS-BI-phosphohydrolase
      • Activity: +
    • 8:
      • @ref: 68382
      • Value: alpha-galactosidase
      • Activity: -
      • Ec: 3.2.1.22
    • 9:
      • @ref: 68382
      • Value: acid phosphatase
      • Activity: +
      • Ec: 3.1.3.2
    • 10:
      • @ref: 68382
      • Value: alpha-chymotrypsin
      • Activity: +
      • Ec: 3.4.21.1
    • 11:
      • @ref: 68382
      • Value: trypsin
      • Activity: +
      • Ec: 3.4.21.4
    • 12:
      • @ref: 68382
      • Value: cystine arylamidase
      • Activity: -
      • Ec: 3.4.11.3
    • 13:
      • @ref: 68382
      • Value: valine arylamidase
      • Activity: -
    • 14:
      • @ref: 68382
      • Value: lipase (C 14)
      • Activity: -
    • 15:
      • @ref: 68382
      • Value: leucine arylamidase
      • Activity: +
      • Ec: 3.4.11.1
    • 16:
      • @ref: 68382
      • Value: esterase lipase (C 8)
      • Activity: +
    • 17:
      • @ref: 68382
      • Value: esterase (C 4)
      • Activity: +
    • 18:
      • @ref: 68382
      • Value: alkaline phosphatase
      • Activity: +
      • Ec: 3.1.3.1
    • 19:
      • @ref: 120690
      • Value: oxidase
      • Activity: +
    • 20:
      • @ref: 120690
      • Value: catalase
      • Activity: +
      • Ec: 1.11.1.6
    • 21:
      • @ref: 120690
      • Value: urease
      • Activity: -
      • Ec: 3.5.1.5
  • API zym:
    • @ref: 120690
    • Control: -
    • Alkaline phosphatase: +
    • Esterase: +
    • Esterase Lipase: +
    • Lipase: -
    • Leucine arylamidase: +
    • Valine arylamidase: -
    • Cystine arylamidase: -
    • Trypsin: +
    • Alpha- Chymotrypsin: +
    • Acid phosphatase: +
    • Naphthol-AS-BI-phosphohydrolase: +
    • Alpha- Galactosidase: -
    • Beta- Galactosidase: -
    • Beta- Glucuronidase: -
    • Alpha- Glucosidase: -
    • Beta- Glucosidase: -
    • N-acetyl-beta- glucosaminidase: -
    • Alpha- Mannosidase: -
    • Alpha- Fucosidase: -

  • Isolation:
    • 0:
      • @ref: 16734
      • Sample type: surface of soy sauce production equipment
      • Country: Japan
      • Origin.country: JPN
      • Continent: Asia
    • 1:
      • @ref: 67770
      • Sample type: Surface of soy sauce production equipment
      • Country: Japan
      • Origin.country: JPN
      • Continent: Asia
    • 2:
      • @ref: 120690
      • Sample type: Surface of equipment in food plant
      • Country: Japan
      • Origin.country: JPN
      • Continent: Asia
  • Isolation source categories:
    • 0:
      • Cat1: #Engineered
      • Cat2: #Food production
    • 1:
      • Cat1: #Engineered
      • Cat2: #Industrial
      • Cat3: #Engineered product
  • Taxonmaps:
    • @ref: 69479
    • File name: preview.99_15833.png
    • Url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_3;96_1276;97_1516;98_1846;99_15833&stattab=map
    • Last taxonomy: Sporosarcina luteola
    • 16S sequence: AB473560
    • Sequence Identity: None
    • Total samples: 2880
    • Soil counts: 1782
    • Aquatic counts: 258
    • Animal counts: 663
    • Plant counts: 177

  • Risk assessment:
    • 0:
      • @ref: 16734
      • Biosafety level: 1
      • Biosafety level comment: Risk group (German classification)
    • 1:
      • @ref: 120690
      • Biosafety level: 1
      • Biosafety level comment: Risk group (French classification)

  • 16S sequences:
    • 0:
      • @ref: 20218
      • Description: Sporosarcina luteola gene for 16S rRNA, partial sequence, strain: NBRC 105378
      • Accession: AB682252
      • Length: 1477
      • Database: nuccore
      • NCBI tax ID: 582850
    • 1:
      • @ref: 16734
      • Description: Sporosarcina luteola gene for 16S ribosomal RNA, partial sequence
      • Accession: AB473560
      • Length: 1507
      • Database: nuccore
      • NCBI tax ID: 582850
  • Genome sequences:
    • 0:
      • @ref: 66792
      • Description: Sporosarcina luteola NBRC 105378
      • Accession: GCA_007991495
      • Assembly level: contig
      • Database: ncbi
      • NCBI tax ID: 582850
    • 1:
      • @ref: 66792
      • Description: Sporosarcina luteola strain NBRC 105378
      • Accession: 582850.3
      • Assembly level: wgs
      • Database: patric
      • NCBI tax ID: 582850
  • GC content:
    • @ref: 16734
    • GC-content: 43.6
    • Method: high performance liquid chromatography (HPLC)

  • Key: 5136850743
  • DatasetKey: d80001c6-1c61-4e04-bf54-6359c7245423
  • PublishingOrgKey: 1bb096cc-5924-4844-8515-11e65e3655f9
  • InstallationKey: 49bdc91b-73fd-4af6-9dff-0701e6da82a5
  • HostingOrganizationKey: 299958e0-4c06-11d8-b290-b8a03c50a862
  • PublishingCountry: DK
  • Protocol: DWC_ARCHIVE
  • LastCrawled: 2025-06-03T00:57:47.491+00:00
  • LastParsed: 2025-06-03T01:15:11.270+00:00
  • CrawlId: 6
  • ProjectId: PRJNA1071982
  • Extensions:
    • Http://rs.gbif.org/terms/1.0/DNADerivedData:
      • 0:
        • Http://rs.gbif.org/terms/pcr primer name forward: MFD_16S_8F
        • Https://w3id.org/mixs/0000050: Pacbio SMRT Sequel IIe
        • Https://w3id.org/mixs/0000044: 16S
        • Http://rs.gbif.org/terms/miqe/annealingTemp: 60
        • Http://rs.gbif.org/terms/pcr primer name reverse: MFD_23S_2490R
        • Http://rs.gbif.org/terms/pcr primer reference: https://doi.org/10.1093/nar/gks808 | https://doi.org/10.1128/AEM.72.3.2221-2225.2006
        • Https://w3id.org/mixs/0000038: PCR
        • Http://rs.gbif.org/terms/miqe/amplificationReactionVolume: 50
        • Https://w3id.org/mixs/0000090: https://doi.org/10.1101/2024.06.27.600767
        • Http://rs.gbif.org/terms/pcr primer forward: AGRGTTYGATYMTGGCTCAG
        • Https://w3id.org/mixs/0000092: Microflora Danica
        • Https://w3id.org/mixs/0000087: https://zenodo.org/records/12605769
        • Https://w3id.org/mixs/0000041: Single
        • Http://rs.gbif.org/terms/miqe/annealingTempUnit: Degrees Celsius
        • Http://rs.gbif.org/terms/pcr primer reverse: CGACATCGAGGTGCCAAAC
    • Http://rs.iobis.org/obis/terms/ExtendedMeasurementOrFact:
      • 0:
        • Http://rs.tdwg.org/dwc/terms/measurementType: associated_bacterial_umi
      • 1:
        • Http://rs.tdwg.org/dwc/terms/measurementValue: SRX23627522
        • Http://rs.tdwg.org/dwc/terms/measurementType: associated_eukaryotic_operon
      • 2:
        • Http://rs.tdwg.org/dwc/terms/measurementValue: SRX23711696
        • Http://rs.tdwg.org/dwc/terms/measurementType: associated_metagenome
      • 3:
        • Http://rs.tdwg.org/dwc/terms/measurementValue: Yes
        • Http://rs.tdwg.org/dwc/terms/measurementType: coords_reliable
      • 4:
        • Http://rs.tdwg.org/dwc/terms/measurementValue: Natural
        • Http://rs.tdwg.org/dwc/terms/measurementType: mfd_areatype
      • 5:
        • Http://rs.tdwg.org/dwc/terms/measurementValue: Saltwater
        • Http://rs.tdwg.org/dwc/terms/measurementType: mfd_hab1
      • 6:
        • Http://rs.tdwg.org/dwc/terms/measurementValue: Fjords
        • Http://rs.tdwg.org/dwc/terms/measurementType: mfd_hab2
      • 7:
        • Http://rs.tdwg.org/dwc/terms/measurementType: mfd_hab3
      • 8:
        • Http://rs.tdwg.org/dwc/terms/measurementValue: Water
        • Http://rs.tdwg.org/dwc/terms/measurementType: mfd_sampletype
      • 9:
        • Http://rs.tdwg.org/dwc/terms/measurementValue: PRJNA1071982
        • Http://rs.tdwg.org/dwc/terms/measurementType: ncbiBioProject
      • 10:
        • Http://rs.tdwg.org/dwc/terms/measurementValue: skive fjord
        • Http://rs.tdwg.org/dwc/terms/measurementType: site_name
      • 11:
        • Http://rs.tdwg.org/dwc/terms/measurementValue: undefined
        • Http://rs.tdwg.org/dwc/terms/measurementType: species
  • BasisOfRecord: MATERIAL_SAMPLE
  • OccurrenceStatus: PRESENT
  • TaxonKey: 8171807
  • KingdomKey: 3
  • PhylumKey: 87
  • ClassKey: 303
  • OrderKey: 11130610
  • FamilyKey: 4707
  • GenusKey: 3228012
  • SpeciesKey: 8171807
  • AcceptedTaxonKey: 8171807
  • ScientificName: Sporosarcina luteola_A
  • AcceptedScientificName: Sporosarcina luteola_A
  • Kingdom: Bacteria
  • Phylum: Firmicutes
  • Order: Bacillales_A
  • Family: Planococcaceae
  • Genus: Sporosarcina
  • Species: Sporosarcina luteola
  • GenericName: Sporosarcina
  • SpecificEpithet: luteola
  • TaxonRank: SPECIES
  • TaxonomicStatus: ACCEPTED
  • DecimalLatitude: 56.5565
  • DecimalLongitude: 9.0763
  • Continent: EUROPE
  • Gadm:
    • Level0:
      • Gid: DNK
      • Name: Denmark
    • Level1:
      • Gid: DNK.2_1
      • Name: Midtjylland
    • Level2:
      • Gid: DNK.2.16_1
      • Name: Skive
  • Year: 2022
  • Month: 2
  • Day: 26
  • EventDate: 2022-02-26
  • StartDayOfYear: 57
  • EndDayOfYear: 57
  • Issues:
    • 0: COUNTRY_DERIVED_FROM_COORDINATES
    • 1: CONTINENT_DERIVED_FROM_COORDINATES
    • 2: TAXON_MATCH_FUZZY
    • 3: TAXON_MATCH_TAXON_ID_IGNORED
  • LastInterpreted: 2025-06-03T01:15:11.270+00:00
  • License: http://creativecommons.org/licenses/by/4.0/legalcode
  • OrganismQuantity: 3.0
  • OrganismQuantityType: DNA sequence reads
  • SampleSizeUnit: DNA sequence reads
  • SampleSizeValue: 34180.0
  • RelativeOrganismQuantity: 8.777062609713282e-05
  • IsSequenced: True
  • AssociatedSequences: https://www.ncbi.nlm.nih.gov/sra/SRX23627521
  • Identifiers:
    • 0:
      • Identifier: MFD09962:FLASV103576.1371
  • Media:
  • Facts:
  • Relations:
  • IsInCluster: False
  • SamplingProtocol: https://doi.org/10.1101/2024.06.27.600767
  • DnaSequenceID:
    • 0: None
  • GeodeticDatum: WGS84
  • Class: Bacilli
  • CountryCode: DK
  • RecordedByIDs:
  • IdentifiedByIDs:
  • GbifRegion: EUROPE
  • Country: Denmark
  • PublishedByGbifRegion: EUROPE
  • IdentificationReferences: https://doi.org/10.1101/2024.06.27.600767
  • EventID: MFD09962
  • Identifier: MFD09962:FLASV103576.1371
  • IdentificationRemarks: SINTAX annotation confidence: 0.80, against reference database: MFD 16S rRNA gene reference database
  • GbifID: 5136850743
  • MaterialSampleID: https://www.ncbi.nlm.nih.gov/biosample/SAMN39873971
  • OccurrenceID: MFD09962:FLASV103576.1371
  • TaxonID: ASV:d41d8cd98f00b204e9800998ecf8427e
  • VerbatimIdentification: d:,Bacteria,p:,Firmicutes,c:,Bacilli,o:,Bacillales,f:,Planococcaceae,g:,Sporosarcina,s:,Sporosarcina_luteola

  • Lineage: cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Bacillales; Caryophanaceae; Sporosarcina
  • LineageEx:
    • Taxon:
      • 0:
        • TaxId: 131567
        • ScientificName: cellular organisms
        • Rank: cellular root
      • 1:
        • TaxId: 2
        • ScientificName: Bacteria
        • Rank: domain
      • 2:
        • TaxId: 1783272
        • ScientificName: Bacillati
        • Rank: kingdom
      • 3:
        • TaxId: 1239
        • ScientificName: Bacillota
        • Rank: phylum
      • 4:
        • TaxId: 91061
        • ScientificName: Bacilli
        • Rank: class
      • 5:
        • TaxId: 1385
        • ScientificName: Bacillales
        • Rank: order
      • 6:
        • TaxId: 186818
        • ScientificName: Caryophanaceae
        • Rank: family
      • 7:
        • TaxId: 1569
        • ScientificName: Sporosarcina
        • Rank: genus