BioRepo | Biosample

Other Information

Cell morphology:
- @ref: 29115
- Gram stain: negative
- Cell length: 1.25 µm
- Cell width: 0.5 µm
- Cell shape: rod-shaped
- Motility: yes
Pigmentation:
- @ref: 29115
- Production: yes

Culture temp:
- 0:
  - @ref: 29115
  - Growth: positive
  - Type: growth
  - Temperature: 18-37
- 1:
  - @ref: 29115
  - Growth: positive
  - Type: optimum
  - Temperature: 30
- 2:
  - @ref: 63519
  - Growth: positive
  - Type: growth
  - Temperature: 30
Culture pH:
- 0:
  - @ref: 29115
  - Ability: positive
  - Type: growth
  - PH: 06-12
  - PH range: alkaliphile
- 1:
  - @ref: 29115
  - Ability: positive
  - Type: optimum
  - PH: 7.5

Oxygen tolerance:
- 0:
  - @ref: 29115
  - Oxygen tolerance: facultative anaerobe
- 1:
  - @ref: 63519
  - Oxygen tolerance: aerobe
Spore formation:
- @ref: 29115
- Spore formation: no
Halophily:
- @ref: 29115
- Salt: NaCl
- Growth: positive
- Tested relation: growth
- Concentration: 0-3 %
Metabolite utilization:
- 0:
  - @ref: 29115
  - Chebi-ID: 37054
  - Metabolite: 3-hydroxybutyrate
  - Utilization activity: +
  - Kind of utilization tested: carbon source
- 1:
  - @ref: 29115
  - Chebi-ID: 21217
  - Metabolite: L-alaninamide
  - Utilization activity: +
  - Kind of utilization tested: carbon source
- 2:
  - @ref: 29115
  - Chebi-ID: 16449
  - Metabolite: alanine
  - Utilization activity: +
  - Kind of utilization tested: carbon source
- 3:
  - @ref: 29115
  - Chebi-ID: 22599
  - Metabolite: arabinose
  - Utilization activity: +
  - Kind of utilization tested: carbon source
- 4:
  - @ref: 29115
  - Chebi-ID: 22653
  - Metabolite: asparagine
  - Utilization activity: +
  - Kind of utilization tested: carbon source
- 5:
  - @ref: 29115
  - Chebi-ID: 35391
  - Metabolite: aspartate
  - Utilization activity: +
  - Kind of utilization tested: carbon source
- 6:
  - @ref: 29115
  - Chebi-ID: 17057
  - Metabolite: cellobiose
  - Utilization activity: +
  - Kind of utilization tested: carbon source
- 7:
  - @ref: 29115
  - Chebi-ID: 23652
  - Metabolite: dextrin
  - Utilization activity: +
  - Kind of utilization tested: carbon source
- 8:
  - @ref: 29115
  - Chebi-ID: 24265
  - Metabolite: gluconate
  - Utilization activity: +
  - Kind of utilization tested: carbon source
- 9:
  - @ref: 29115
  - Chebi-ID: 17234
  - Metabolite: glucose
  - Utilization activity: +
  - Kind of utilization tested: carbon source
- 10:
  - @ref: 29115
  - Chebi-ID: 29987
  - Metabolite: glutamate
  - Utilization activity: +
  - Kind of utilization tested: carbon source
- 11:
  - @ref: 29115
  - Chebi-ID: 28087
  - Metabolite: glycogen
  - Utilization activity: +
  - Kind of utilization tested: carbon source
- 12:
  - @ref: 29115
  - Chebi-ID: 17596
  - Metabolite: inosine
  - Utilization activity: +
  - Kind of utilization tested: carbon source
- 13:
  - @ref: 29115
  - Chebi-ID: 24996
  - Metabolite: lactate
  - Utilization activity: +
  - Kind of utilization tested: carbon source
- 14:
  - @ref: 29115
  - Chebi-ID: 25017
  - Metabolite: leucine
  - Utilization activity: +
  - Kind of utilization tested: carbon source
- 15:
  - @ref: 29115
  - Chebi-ID: 17306
  - Metabolite: maltose
  - Utilization activity: +
  - Kind of utilization tested: carbon source
- 16:
  - @ref: 29115
  - Chebi-ID: 37684
  - Metabolite: mannose
  - Utilization activity: +
  - Kind of utilization tested: carbon source
- 17:
  - @ref: 29115
  - Chebi-ID: 28053
  - Metabolite: melibiose
  - Utilization activity: +
  - Kind of utilization tested: carbon source
- 18:
  - @ref: 29115
  - Chebi-ID: 51850
  - Metabolite: methyl pyruvate
  - Utilization activity: +
  - Kind of utilization tested: carbon source
- 19:
  - @ref: 29115
  - Chebi-ID: 18257
  - Metabolite: ornithine
  - Utilization activity: +
  - Kind of utilization tested: carbon source
- 20:
  - @ref: 29115
  - Chebi-ID: 26271
  - Metabolite: proline
  - Utilization activity: +
  - Kind of utilization tested: carbon source
- 21:
  - @ref: 29115
  - Chebi-ID: 17822
  - Metabolite: serine
  - Utilization activity: +
  - Kind of utilization tested: carbon source
- 22:
  - @ref: 29115
  - Chebi-ID: 30911
  - Metabolite: sorbitol
  - Utilization activity: +
  - Kind of utilization tested: carbon source
- 23:
  - @ref: 29115
  - Chebi-ID: 26986
  - Metabolite: threonine
  - Utilization activity: +
  - Kind of utilization tested: carbon source
- 24:
  - @ref: 29115
  - Chebi-ID: 27082
  - Metabolite: trehalose
  - Utilization activity: +
  - Kind of utilization tested: carbon source
- 25:
  - @ref: 29115
  - Chebi-ID: 16704
  - Metabolite: uridine
  - Utilization activity: +
  - Kind of utilization tested: carbon source
- 26:
  - @ref: 29115
  - Chebi-ID: 4853
  - Metabolite: esculin
  - Utilization activity: +
  - Kind of utilization tested: hydrolysis
Metabolite production:
- @ref: 29115
- Chebi-ID: 35581
- Metabolite: indole
- Production: yes
Metabolite tests:
- @ref: 29115
- Chebi-ID: 35581
- Metabolite: indole
- Indole test: +
Enzymes:
- 0:
  - @ref: 29115
  - Value: acid phosphatase
  - Activity: +
  - Ec: 3.1.3.2
- 1:
  - @ref: 29115
  - Value: alkaline phosphatase
  - Activity: +
  - Ec: 3.1.3.1
- 2:
  - @ref: 29115
  - Value: catalase
  - Activity: +
  - Ec: 1.11.1.6
- 3:
  - @ref: 29115
  - Value: cytochrome oxidase
  - Activity: +
  - Ec: 1.9.3.1

Isolation:
- 0:
  - @ref: 29115
  - Sample type: soil
- 1:
  - @ref: 63519
  - Sample type: Desert soil
  - Sampling date: 2009
  - Country: China
  - Origin.country: CHN
  - Continent: Asia
Isolation source categories:
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
Taxonmaps:
- @ref: 69479
- File name: preview.99_17052.png
- Url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_76;96_8755;97_10529;98_12915;99_17052&stattab=map
- Last taxonomy: Chryseobacterium taklimakanense subclade
- 16S sequence: EU718058
- Sequence Identity: None
- Total samples: 7814
- Soil counts: 672
- Aquatic counts: 1299
- Animal counts: 5698
- Plant counts: 145

16S sequences:
- @ref: 29115
- Description: Planobacterium taklimakanense strain X-65 16S ribosomal RNA gene, partial sequence
- Accession: EU718058
- Length: 1391
- Database: nuccore
- NCBI tax ID: 536441
Genome sequences:
- 0:
  - @ref: 66792
  - Description: Chryseobacterium taklimakanense NCTC13490
  - Accession: GCA_900187185
  - Assembly level: complete
  - Database: ncbi
  - NCBI tax ID: 536441
- 1:
  - @ref: 66792
  - Description: Chryseobacterium taklimakanense strain NCTC13490
  - Accession: 536441.3
  - Assembly level: complete
  - Database: patric
  - NCBI tax ID: 536441
- 2:
  - @ref: 66792
  - Description: Chryseobacterium taklimakanense NCTC 13490
  - Accession: 2765235860
  - Assembly level: complete
  - Database: img
  - NCBI tax ID: 536441
GC content:
- @ref: 29115
- GC-content: 41.5

Key: 4152693790
DatasetKey: d8cd16ba-bb74-4420-821e-083f2bac17c2
PublishingOrgKey: ada9d123-ddb4-467d-8891-806ea8d94230
InstallationKey: 17a83780-3060-4851-9d6f-029d5fcb81c9
HostingOrganizationKey: fbca90e3-8aed-48b1-84e3-369afbd000ce
PublishingCountry: GB
Protocol: EML
LastCrawled: 2025-06-28T12:04:10.659+00:00
LastParsed: 2025-06-28T12:30:43.400+00:00
CrawlId: 226
Extensions:
BasisOfRecord: MATERIAL_SAMPLE
OccurrenceStatus: PRESENT
TaxonKey: 8240407
KingdomKey: 3
PhylumKey: 10707955
ClassKey: 7498440
OrderKey: 569
FamilyKey: 10770242
GenusKey: 7673618
SpeciesKey: 8345225
AcceptedTaxonKey: 8345225
ScientificName: Chryseobacterium taklimakanense (Peng et al., 2009) Holmes et al., 2013
AcceptedScientificName: Planobacterium taklimakanense Peng et al., 2009
Kingdom: Bacteria
Phylum: Bacteroidota
Order: Flavobacteriales
Family: Weeksellaceae
Genus: Planobacterium
Species: Planobacterium taklimakanense
GenericName: Chryseobacterium
SpecificEpithet: taklimakanense
TaxonRank: SPECIES
TaxonomicStatus: SYNONYM
IucnRedListCategory: NE
Continent: ASIA
Gadm:
EventDate: 1900/2009
Issues:
- 0: CONTINENT_DERIVED_FROM_COUNTRY
- 1: TAXON_MATCH_TAXON_CONCEPT_ID_IGNORED
- 2: TAXON_MATCH_TAXON_ID_IGNORED
LastInterpreted: 2025-06-28T12:30:43.400+00:00
References: https://www.ebi.ac.uk/ena/browser/view/LT906465
License: http://creativecommons.org/licenses/by/4.0/legalcode
IsSequenced: True
AssociatedSequences: https://www.ebi.ac.uk/ena/browser/api/embl/LT906465
Identifiers:
- 0:
  - Identifier: LT906465
Media:
Facts:
Relations:
IsInCluster: False
DnaSequenceID:
Class: Bacteroidia
CountryCode: CN
RecordedByIDs:
IdentifiedByIDs:
GbifRegion: ASIA
Country: China
PublishedByGbifRegion: EUROPE
Identifier: LT906465
TaxonConceptID: https://www.ebi.ac.uk/ena/browser/view/Taxon:536441
GbifID: 4152693790
OccurrenceRemarks: Chryseobacterium taklimakanense strain NCTC13490 genome assembly, chromosome: 1
OccurrenceID: LT906465
TaxonID: ASV:f6caf6de2a07c118ae24ace54925e20d

Lineage: cellular organisms; Bacteria; Pseudomonadati; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Flavobacteriia; Flavobacteriales; Weeksellaceae; Chryseobacterium group; Chryseobacterium
LineageEx:
- Taxon:
  - 0:
    - TaxId: 131567
    - ScientificName: cellular organisms
    - Rank: cellular root
  - 1:
    - TaxId: 2
    - ScientificName: Bacteria
    - Rank: domain
  - 2:
    - TaxId: 3379134
    - ScientificName: Pseudomonadati
    - Rank: kingdom
  - 3:
    - TaxId: 1783270
    - ScientificName: FCB group
    - Rank: clade
  - 4:
    - TaxId: 68336
    - ScientificName: Bacteroidota/Chlorobiota group
    - Rank: clade
  - 5:
    - TaxId: 976
    - ScientificName: Bacteroidota
    - Rank: phylum
  - 6:
    - TaxId: 117743
    - ScientificName: Flavobacteriia
    - Rank: class
  - 7:
    - TaxId: 200644
    - ScientificName: Flavobacteriales
    - Rank: order
  - 8:
    - TaxId: 2762318
    - ScientificName: Weeksellaceae
    - Rank: family
  - 9:
    - TaxId: 2782232
    - ScientificName: Chryseobacterium group
    - Rank: no rank
  - 10:
    - TaxId: 59732
    - ScientificName: Chryseobacterium
    - Rank: genus

General Information

Sample Information

Other Information

General Information

Sample Information

Other Information

Morphology

Culture and growth conditions

Physiology and metabolism

Isolation, sampling and environmental information

Sequence information

Occurence (geoference records)

Name and taxonomic classification