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General Information
Title Inacc No : InaCC B1445, Scientific Name: Chelatococcus thermostellatus
Organism Chelatococcus thermostellatus
Sample Type Microbe
Description
External Links
Description URL
None

Sample Information
Sample Attribute
Sample Name InaCC B1445
Sample Title Inacc No : InaCC B1445, Scientific Name: Chelatococcus thermostellatus
Description
Taxonomy ID 2741498
Bioproject Id
Locus Tag Prefix
Strain Chelatococcus thermostellatus DEA 11
Isolate
Isolation Source Sediment and polypropylene waste
Host
Lab Host
Biomaterial Provider
Sample Type cell culture
Collection Date N/A
Geographic Location Name Indonesia:Muara Angke Jakarta
Latitude Longitude
Environmental Biome
Depth
Altitude
Collected By Dian Andriani
Culture Collection Indonesian Culture Collection (InaCC) B1445
Genotype
Host Tissue Sampled
Identified By
Mating Type
Passage History
Sample Size
Serotype
Serovar
Specimen Voucher
Temperature 30
Organism 3139
Growth Media Bushnell Haas (BH) medium
Center Direktorat Pengelolaan Laboratorium, Fasilitas Riset, dan Kawasan Sains dan Teknologi
Lab Pusat Sekuensing
Submitter Lab Pusat Sekuensing - BRIN
Submitted at 26-09-2024
Published at 02-10-2024

Other Information

  • Key: 4974578265
  • DatasetKey: d55b6174-38c9-4c48-832a-ef08c278d127
  • PublishingOrgKey: 81724943-d4d5-4b72-bfd6-3cfc5725c12a
  • InstallationKey: 73ebc470-17bd-4130-a880-1be5cfb16e4d
  • HostingOrganizationKey: f072f648-b8a4-47a0-9e1c-89d790645b5a
  • PublishingCountry: CO
  • Protocol: EML
  • LastCrawled: 2024-10-29T20:02:36.078+00:00
  • LastParsed: 2024-10-29T20:04:08.400+00:00
  • CrawlId: 1
  • ProjectId: 71475
  • Extensions:
    • Http://rs.gbif.org/terms/1.0/DNADerivedData:
      • 0:
        • Http://rs.gbif.org/terms/pcr primer reference: https://www.arb-silva.de/
        • Https://w3id.org/mixs/0000001: 7316 cubic meters
        • Https://w3id.org/mixs/0000050: MiSeq (Illumina)
        • Http://rs.gbif.org/terms/pcr primer name reverse: Bakt_805R
        • Http://rs.gbif.org/terms/pcr primer forward: CCTACGGGNGGCWGCAG
        • Http://rs.gbif.org/terms/pcr primer reverse: GACTACHVGGGTATCTAATCC
        • Https://w3id.org/mixs/0000014: water surface[ENVO_01001191]
        • Https://w3id.org/mixs/0000087: Silva.nr v138
        • Https://w3id.org/mixs/0000058: MOTHUR v1.48.0
        • Http://rs.gbif.org/terms/pcr primer name forward: Bakt_341F
        • Https://w3id.org/mixs/0000045: V3, V4
        • Https://w3id.org/mixs/0000044: 16s rRN
        • Http://rs.tdwg.org/dwc/terms/occurrenceID: UTADEO:Redes:MAGPLL:OTU-1185
    • Http://data.ggbn.org/schemas/ggbn/terms/Permit:
      • 0:
        • Http://data.ggbn.org/schemas/ggbn/terms/permitType: Permiso para la recolección de especímenes de especies silvestres
        • Http://data.ggbn.org/schemas/ggbn/terms/permitStatus: Permiso vigente
        • Http://data.ggbn.org/schemas/ggbn/terms/permitText: ANLA:00213:2021:UTADEO
  • BasisOfRecord: MATERIAL_SAMPLE
  • OccurrenceStatus: PRESENT
  • TaxonKey: 3220881
  • KingdomKey: 3
  • PhylumKey: 111
  • ClassKey: 197
  • OrderKey: 1221
  • FamilyKey: 7813
  • GenusKey: 3220881
  • AcceptedTaxonKey: 3220881
  • ScientificName: Chelatococcus Auling et al., 1993
  • AcceptedScientificName: Chelatococcus Auling et al., 1993
  • Kingdom: Bacteria
  • Phylum: Proteobacteria
  • Order: Rhizobiales
  • Family: Beijerinckiaceae
  • Genus: Chelatococcus
  • GenericName: Chelatococcus
  • TaxonRank: GENUS
  • TaxonomicStatus: ACCEPTED
  • DateIdentified: 2022-12-26T00:00:00
  • DecimalLatitude: 11.072667
  • DecimalLongitude: -73.684389
  • CoordinateUncertaintyInMeters: 60000.0
  • Elevation: 0.0
  • ElevationAccuracy: 0.0
  • Depth: 0.5
  • DepthAccuracy: 0.5
  • Continent: SOUTH_AMERICA
  • StateProvince: Magdalena
  • Gadm:
    • Level0:
      • Gid: COL
      • Name: Colombia
    • Level1:
      • Gid: COL.20_2
      • Name: Magdalena
    • Level2:
      • Gid: COL.20.26_2
      • Name: Santa Marta
  • WaterBody: Mar Caribe
  • HigherGeography: América|Sudamérica|Colombia|Región Caribe|Magdalena|Santa Marta
  • GeoreferencedBy: Luis Garzón-Rodríguez
  • Year: 2022
  • Month: 9
  • EventDate: 2022-09-09/2022-09-13
  • StartDayOfYear: 252
  • EndDayOfYear: 256
  • Issues:
    • 0: COORDINATE_ROUNDED
    • 1: TAXON_MATCH_SCIENTIFIC_NAME_ID_IGNORED
    • 2: INSTITUTION_MATCH_NONE
  • Modified: 2024-07-03T00:00:00.000+00:00
  • LastInterpreted: 2024-10-29T20:04:08.400+00:00
  • License: http://creativecommons.org/licenses/by-nc/4.0/legalcode
  • OrganismQuantity: 1.0
  • OrganismQuantityType: DNA sequence reads
  • SampleSizeUnit: DNA sequence reads
  • SampleSizeValue: 36634.0
  • RelativeOrganismQuantity: 2.7297046459573073e-05
  • IsSequenced: True
  • Identifiers:
    • 0:
      • Identifier: UTADEO:Redes:MAGPLL:OTU-1185
  • Media:
  • Facts:
  • Relations:
  • IsInCluster: False
  • RecordedBy: Luis Garzón-Rodríguez
  • IdentifiedBy: Katherine Bedoya-Urrego|Juan Fernando Alzate-Restrepo
  • Preparations: Colecta definitiva: Preparación de muestra microbiológica|Extracción de ADN
  • SamplingProtocol: Arrastre superficial
  • GeodeticDatum: WGS84
  • Class: Alphaproteobacteria
  • CountryCode: CO
  • RecordedByIDs:
    • 0:
      • Type: ORCID
      • Value: https://orcid.org/0000-0003-3660-9961
  • IdentifiedByIDs:
    • 0:
      • Type: ORCID
      • Value: https://orcid.org/0000-0003-2578-4609
    • 1:
      • Type: ORCID
      • Value: https://orcid.org/0000-0001-7403-7373
  • GbifRegion: LATIN_AMERICA
  • Country: Colombia
  • PublishedByGbifRegion: LATIN_AMERICA
  • Habitat: Marino-costero superficial
  • InstitutionID: 860.006.848-6
  • ScientificNameID: urn:lsid:marinespecies.org:taxname:571099
  • SamplingEffort: 45 arrastres
  • County: Santa Marta
  • EventRemarks: Época lluviosa
  • Language: es
  • GbifID: 4974578265
  • Type: PhysicalObject
  • VerbatimIdentification: Chelatococcus
  • LocationRemarks: Muestras recolectadas en los departamentos de Atlántico y Magdalena
  • InstitutionCode: Fundación Universidad de Bogotá Jorge Tadeo Lozano (UTadeo)
  • NameAccordingToID: https://www.marinespecies.org/aphia.php?p=taxdetails&id=571099
  • EventTime: 05:00:00/17:00:00
  • IdentificationRemarks: Extracción y secuenciación de las regiones V3-V4 del gen 16s rRNA con métodos metagenómicos empleando los primers Bakt_341F y Bakt_805R, clasificando las secuencias con la base de datos 16S Silva (Silva.nr v138) y revisado en GBIF.
  • NameAccordingTo: WoRMS (2024). Chelatococcus Auling, Busse, Egli, El-Banna & Stackebrandt, 1993. Accessed at: https://www.marinespecies.org/aphia.php?p=taxdetails&id=571099 on 2024-08-20
  • Identifier: UTADEO:Redes:MAGPLL:OTU-1185
  • RecordNumber: MAGPLL
  • VerbatimSRS: WGS84
  • VerbatimCoordinateSystem: Grados, minutos, segundos
  • GeoreferenceRemarks: Se eligió la coordenada de la estación más central dentro de un mustreo en el que se hizo un recorrido de 120 km. La incertidumbre se calculó como la mitad de la distancia recorrida.
  • Locality: Muestreo durante 5 días en estaciones delimitadas por la isóbata de los 30 metros de profundidad ubicadas desde El Rodadero hasta Puerto Velero, incluyendo además puntos en el norte de la Ciénaga Grande de Santa Marta
  • VerticalDatum: epsg:4326
  • OccurrenceID: UTADEO:Redes:MAGPLL:OTU-1185
  • VerbatimDepth: 0 a -1
  • LocationID: http://marineregions.org/mrgid/25303
  • OccurrenceRemarks: Recolectado a partir de muestras de microplástico
  • HigherClassification: Bacteria | Proteobacteria | Alphaproteobacteria | Rhizobiales | Beijerinckiaceae | Chelatococcus

  • Multimedia:
    • @ref: 64920
    • Multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_28244.jpg
    • Intellectual property rights: © Leibniz-Institut DSMZ

  • Culture medium:
    • @ref: 64920
    • Name: NUTRIENT AGAR (DSMZ Medium 1)
    • Growth: yes
    • Link: https://mediadive.dsmz.de/medium/1
    • Composition: Name: NUTRIENT AGAR (DSMZ Medium 1; with strain-specific modifications) Composition: Agar 15.0 g/l NaCl 5.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
  • Culture temp:
    • @ref: 64920
    • Growth: positive
    • Type: growth
    • Temperature: 50

  • Isolation:
    • @ref: 64920
    • Sample type: aerobic organic waste treatment plant
    • Geographic location: Münster
    • Country: Germany
    • Origin.country: DEU
    • Continent: Europe
  • Isolation source categories:
    • 0:
      • Cat1: #Engineered
      • Cat2: #Industrial
      • Cat3: #Plant (Factory)
    • 1:
      • Cat1: #Engineered
      • Cat2: #Waste
      • Cat3: #Solid waste
  • Taxonmaps:
    • @ref: 69479
    • File name: preview.99_32863.png
    • Url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_86;96_866;97_1014;98_1197;99_32863&stattab=map
    • Last taxonomy: Chelatococcus
    • 16S sequence: GQ871852
    • Sequence Identity: None
    • Total samples: 634
    • Soil counts: 359
    • Aquatic counts: 84
    • Animal counts: 150
    • Plant counts: 41

  • 16S sequences:
    • @ref: 64920
    • Description: Chelatococcus thermostellatus strain MW9 16S ribosomal RNA gene, partial sequence
    • Accession: GQ871852
    • Length: 1481
    • Database: nuccore
    • NCBI tax ID: 2741498
  • GC content:
    • @ref: 64920
    • GC-content: 67.1

  • Lineage: cellular organisms; Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Chelatococcaceae; Chelatococcus
  • LineageEx:
    • Taxon:
      • 0:
        • TaxId: 131567
        • ScientificName: cellular organisms
        • Rank: no rank
      • 1:
        • TaxId: 2
        • ScientificName: Bacteria
        • Rank: superkingdom
      • 2:
        • TaxId: 1224
        • ScientificName: Pseudomonadota
        • Rank: phylum
      • 3:
        • TaxId: 28211
        • ScientificName: Alphaproteobacteria
        • Rank: class
      • 4:
        • TaxId: 356
        • ScientificName: Hyphomicrobiales
        • Rank: order
      • 5:
        • TaxId: 2036754
        • ScientificName: Chelatococcaceae
        • Rank: family
      • 6:
        • TaxId: 28209
        • ScientificName: Chelatococcus
        • Rank: genus