General Information

Title Inacc No : InaCC B1315, Scientific Name: Burkholderia sp.
Organism Burkholderia sp.
Sample Type Microbe
Description
External Links
Description URL
None

Sample Information

Sample Attribute
Sample Name InaCC B1315
Sample Title Inacc No : InaCC B1315, Scientific Name: Burkholderia sp.
Description
Taxonomy ID 36773
Bioproject Id
Locus Tag Prefix
Strain Burkholderia sp. KR15-23
Isolate
Isolation Source Fluid of Nepenthes ampullaria
Host
Lab Host
Biomaterial Provider
Sample Type cell culture
Collection Date N/A
Geographic Location Name Indonesia: KEPRI, Betina Mount, Karimun Besar
Latitude Longitude
Environmental Biome
Depth
Altitude
Collected By
Culture Collection Indonesian Culture Collection (InaCC) B1315
Genotype
Host Tissue Sampled
Identified By
Mating Type
Passage History
Sample Size
Serotype
Serovar
Specimen Voucher
Temperature 25-30
Organism 1014
Growth Media R2A / NA
Center Direktorat Pengelolaan Laboratorium, Fasilitas Riset, dan Kawasan Sains dan Teknologi
Lab Pusat Sekuensing
Submitter Lab Pusat Sekuensing - BRIN
Submitted at 26-09-2024
Published at 02-10-2024

Other Information

  • Key: 4152794299
  • DatasetKey: d8cd16ba-bb74-4420-821e-083f2bac17c2
  • PublishingOrgKey: ada9d123-ddb4-467d-8891-806ea8d94230
  • InstallationKey: 17a83780-3060-4851-9d6f-029d5fcb81c9
  • HostingOrganizationKey: fbca90e3-8aed-48b1-84e3-369afbd000ce
  • PublishingCountry: GB
  • Protocol: EML
  • LastCrawled: 2024-10-19T12:05:58.350+00:00
  • LastParsed: 2024-10-19T12:53:07.308+00:00
  • CrawlId: 189
  • Extensions:
  • BasisOfRecord: MATERIAL_SAMPLE
  • OccurrenceStatus: PRESENT
  • TaxonKey: 11082319
  • KingdomKey: 3
  • PhylumKey: 111
  • ClassKey: 362
  • OrderKey: 648
  • FamilyKey: 5438
  • GenusKey: 3219916
  • SpeciesKey: 11082319
  • AcceptedTaxonKey: 11082319
  • ScientificName: Burkholderia cepacia_D
  • AcceptedScientificName: Burkholderia cepacia_D
  • Kingdom: Bacteria
  • Phylum: Proteobacteria
  • Order: Burkholderiales
  • Family: Burkholderiaceae
  • Genus: Burkholderia
  • Species: Burkholderia cepacia
  • GenericName: Burkholderia
  • SpecificEpithet: cepacia
  • TaxonRank: SPECIES
  • TaxonomicStatus: ACCEPTED
  • DecimalLatitude: 30.77
  • DecimalLongitude: 76.57
  • Continent: ASIA
  • Gadm:
    • Level0:
      • Gid: IND
      • Name: India
    • Level1:
      • Gid: IND.28_1
      • Name: Punjab
    • Level2:
      • Gid: IND.28.19_1
      • Name: Sahibzada Ajit Singh Nagar
    • Level3:
      • Gid: IND.28.19.1_1
      • Name: Kharar
  • Year: 2023
  • Month: 1
  • Day: 11
  • EventDate: 2023-01-11
  • StartDayOfYear: 11
  • EndDayOfYear: 11
  • Issues:
    • 0: GEODETIC_DATUM_ASSUMED_WGS84
    • 1: CONTINENT_DERIVED_FROM_COORDINATES
    • 2: TAXON_MATCH_TAXON_CONCEPT_ID_IGNORED
    • 3: TAXON_MATCH_TAXON_ID_IGNORED
  • LastInterpreted: 2024-10-19T12:53:07.308+00:00
  • References: https://www.ebi.ac.uk/ena/browser/view/OQ581750
  • License: http://creativecommons.org/licenses/by/4.0/legalcode
  • IsSequenced: True
  • AssociatedSequences: https://www.ebi.ac.uk/ena/browser/api/embl/OQ581750
  • Identifiers:
    • 0:
      • Identifier: OQ581750
  • Media:
  • Facts:
  • Relations:
  • IsInCluster: False
  • RecordedBy: Kavita
  • IdentifiedBy: R. P. Pandey
  • GeodeticDatum: WGS84
  • Class: Gammaproteobacteria
  • CountryCode: IN
  • RecordedByIDs:
  • IdentifiedByIDs:
  • Country: India
  • GbifRegion: ASIA
  • PublishedByGbifRegion: EUROPE
  • Identifier: OQ581750
  • TaxonConceptID: https://www.ebi.ac.uk/ena/browser/view/Taxon:292
  • OccurrenceRemarks: Burkholderia cepacia strain 43B 16S ribosomal RNA gene, partial sequence.
  • GbifID: 4152794299
  • OccurrenceID: OQ581750
  • TaxonID: ASV:6098dd68bad96ad249cbaae2d00ee1f0

  • Multimedia:
    • @ref: 68782
    • Multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_110723.jpg
    • Caption: DSM 110723 on medium 535 at 25 °C
    • Intellectual property rights: Leibniz-Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH

  • Culture medium:
    • @ref: 68782
    • Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)
    • Growth: yes
    • Link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium535.pdf
  • Culture temp:
    • @ref: 68782
    • Growth: positive
    • Type: growth
    • Temperature: 25

  • Metabolite utilization:
    • 0:
      • @ref: 68369
      • Chebi-ID: 25115
      • Metabolite: malate
      • Utilization activity: +
      • Kind of utilization tested: assimilation
    • 1:
      • @ref: 68369
      • Chebi-ID: 17128
      • Metabolite: adipate
      • Utilization activity: -
      • Kind of utilization tested: assimilation
    • 2:
      • @ref: 68369
      • Chebi-ID: 27689
      • Metabolite: decanoate
      • Utilization activity: +
      • Kind of utilization tested: assimilation
    • 3:
      • @ref: 68369
      • Chebi-ID: 24265
      • Metabolite: gluconate
      • Utilization activity: +
      • Kind of utilization tested: assimilation
    • 4:
      • @ref: 68369
      • Chebi-ID: 17306
      • Metabolite: maltose
      • Utilization activity: -
      • Kind of utilization tested: assimilation
    • 5:
      • @ref: 68369
      • Chebi-ID: 59640
      • Metabolite: N-acetylglucosamine
      • Utilization activity: +
      • Kind of utilization tested: assimilation
    • 6:
      • @ref: 68369
      • Chebi-ID: 16899
      • Metabolite: D-mannitol
      • Utilization activity: +
      • Kind of utilization tested: assimilation
    • 7:
      • @ref: 68369
      • Chebi-ID: 16024
      • Metabolite: D-mannose
      • Utilization activity: +
      • Kind of utilization tested: assimilation
    • 8:
      • @ref: 68369
      • Chebi-ID: 30849
      • Metabolite: L-arabinose
      • Utilization activity: +
      • Kind of utilization tested: assimilation
    • 9:
      • @ref: 68369
      • Chebi-ID: 17634
      • Metabolite: D-glucose
      • Utilization activity: +
      • Kind of utilization tested: assimilation
    • 10:
      • @ref: 68369
      • Chebi-ID: 5291
      • Metabolite: gelatin
      • Utilization activity: -
      • Kind of utilization tested: hydrolysis
    • 11:
      • @ref: 68369
      • Chebi-ID: 4853
      • Metabolite: esculin
      • Utilization activity: -
      • Kind of utilization tested: hydrolysis
    • 12:
      • @ref: 68369
      • Chebi-ID: 16199
      • Metabolite: urea
      • Utilization activity: -
      • Kind of utilization tested: hydrolysis
    • 13:
      • @ref: 68369
      • Chebi-ID: 29016
      • Metabolite: arginine
      • Utilization activity: -
      • Kind of utilization tested: hydrolysis
    • 14:
      • @ref: 68369
      • Chebi-ID: 17634
      • Metabolite: D-glucose
      • Utilization activity: -
      • Kind of utilization tested: fermentation
    • 15:
      • @ref: 68369
      • Chebi-ID: 27897
      • Metabolite: tryptophan
      • Utilization activity: -
      • Kind of utilization tested: energy source
    • 16:
      • @ref: 68369
      • Chebi-ID: 17632
      • Metabolite: nitrate
      • Utilization activity: -
      • Kind of utilization tested: reduction
  • Metabolite production:
    • @ref: 68369
    • Chebi-ID: 35581
    • Metabolite: indole
    • Production: no
  • Metabolite tests:
    • @ref: 68369
    • Chebi-ID: 35581
    • Metabolite: indole
    • Indole test: -
  • Enzymes:
    • 0:
      • @ref: 68369
      • Value: cytochrome oxidase
      • Activity: -
      • Ec: 1.9.3.1
    • 1:
      • @ref: 68369
      • Value: gelatinase
      • Activity: -
    • 2:
      • @ref: 68369
      • Value: beta-glucosidase
      • Activity: -
      • Ec: 3.2.1.21
    • 3:
      • @ref: 68369
      • Value: urease
      • Activity: -
      • Ec: 3.5.1.5
    • 4:
      • @ref: 68369
      • Value: arginine dihydrolase
      • Activity: -
      • Ec: 3.5.3.6
  • API 20NE:
    • @ref: 68782
    • NO3: -
    • TRP: -
    • GLU Ferm: -
    • ADH Arg: -
    • URE: -
    • ESC: -
    • GEL: -
    • PNPG: +
    • GLU Assim: +
    • ARA: +
    • MNE: +
    • MAN: +
    • NAG: +
    • MAL: -
    • GNT: +
    • CAP: +
    • ADI: -
    • MLT: +
    • CIT: +
    • PAC: +
    • OX: -

  • Isolation:
    • @ref: 68782
    • Sample type: soil collected from shallow plant roots in a mixed deciduous parkland forest
    • Geographic location: British Columbia, Burnaby
    • Country: Canada
    • Origin.country: CAN
    • Continent: North America
    • Latitude: 49.2694
    • Longitude: -122.949

  • 16S sequences:
    • @ref: 68782
    • Description: Burkholderia sp. strain RL16-012-BIC-B 16S ribosomal RNA gene, partial sequence
    • Accession: MK373450
    • Length: 1384
    • Database: nuccore
    • NCBI tax ID: 36773
  • Genome sequences:
    • @ref: 66792
    • Description: Paraburkholderia madseniana RL16-012-BIC-B
    • Accession: GCA_013177715
    • Assembly level: contig
    • Database: ncbi
    • NCBI tax ID: 2599607

  • Lineage: cellular organisms; Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; unclassified Burkholderia
  • LineageEx:
    • Taxon:
      • 0:
        • TaxId: 131567
        • ScientificName: cellular organisms
        • Rank: no rank
      • 1:
        • TaxId: 2
        • ScientificName: Bacteria
        • Rank: superkingdom
      • 2:
        • TaxId: 1224
        • ScientificName: Pseudomonadota
        • Rank: phylum
      • 3:
        • TaxId: 28216
        • ScientificName: Betaproteobacteria
        • Rank: class
      • 4:
        • TaxId: 80840
        • ScientificName: Burkholderiales
        • Rank: order
      • 5:
        • TaxId: 119060
        • ScientificName: Burkholderiaceae
        • Rank: family
      • 6:
        • TaxId: 32008
        • ScientificName: Burkholderia
        • Rank: genus
      • 7:
        • TaxId: 2613784
        • ScientificName: unclassified Burkholderia
        • Rank: no rank