General Information

Title Inacc No : InaCC B1355, Scientific Name: Pseudomonas palmensis
Organism Pseudomonas palmensis
Sample Type Microbe
Description
External Links
Description URL
None

Sample Information

Sample Attribute
Sample Name InaCC B1355
Sample Title Inacc No : InaCC B1355, Scientific Name: Pseudomonas palmensis
Description
Taxonomy ID 2815362
Bioproject Id
Locus Tag Prefix
Strain Pseudomonas palmensis P35
Isolate
Isolation Source Coffee Pulp Waste I
Host
Lab Host
Biomaterial Provider
Sample Type cell culture
Collection Date N/A
Geographic Location Name Indonesia:East java, Situbondo
Latitude Longitude
Environmental Biome
Depth
Altitude
Collected By Puspita Lisdiyanti
Culture Collection Indonesian Culture Collection (InaCC) B1355
Genotype
Host Tissue Sampled
Identified By
Mating Type
Passage History
Sample Size
Serotype
Serovar
Specimen Voucher
Temperature 30
Organism 3138
Growth Media Coffee Pulp Extract (0.5 g/L),
Center Direktorat Pengelolaan Laboratorium, Fasilitas Riset, dan Kawasan SainsĀ danĀ Teknologi
Lab Pusat Sekuensing
Submitter Lab Pusat Sekuensing - BRIN
Submitted at 26-09-2024
Published at 02-10-2024

Other Information

  • Key: 3347408719
  • DatasetKey: 393b8c26-e4e0-4dd0-a218-93fc074ebf4e
  • PublishingOrgKey: ada9d123-ddb4-467d-8891-806ea8d94230
  • InstallationKey: 17a83780-3060-4851-9d6f-029d5fcb81c9
  • HostingOrganizationKey: fbca90e3-8aed-48b1-84e3-369afbd000ce
  • PublishingCountry: GB
  • Protocol: EML
  • LastCrawled: 2024-10-19T12:02:47.594+00:00
  • LastParsed: 2024-10-19T12:23:32.465+00:00
  • CrawlId: 189
  • Extensions:
  • BasisOfRecord: MATERIAL_SAMPLE
  • OccurrenceStatus: PRESENT
  • TaxonKey: 12166926
  • KingdomKey: 3
  • PhylumKey: 111
  • ClassKey: 362
  • OrderKey: 1474
  • FamilyKey: 5607
  • GenusKey: 11155068
  • SpeciesKey: 12225650
  • AcceptedTaxonKey: 12225650
  • ScientificName: Pseudomonas palmensis
  • AcceptedScientificName: Pseudomonas_Q kirkiae
  • Kingdom: Bacteria
  • Phylum: Proteobacteria
  • Order: Pseudomonadales
  • Family: Pseudomonadaceae
  • Genus: Pseudomonas_Q
  • Species: Pseudomonas
  • GenericName: Pseudomonas
  • SpecificEpithet: palmensis
  • TaxonRank: SPECIES
  • TaxonomicStatus: SYNONYM
  • IucnRedListCategory: NE
  • Gadm:
  • Year: 2017
  • Month: 12
  • Day: 3
  • EventDate: 2017-12-03
  • StartDayOfYear: 337
  • EndDayOfYear: 337
  • Issues:
    • 0: TAXON_MATCH_TAXON_CONCEPT_ID_IGNORED
  • LastInterpreted: 2024-10-19T12:23:32.465+00:00
  • References: https://www.ebi.ac.uk/ena/browser/view/JAFKEC010000000
  • License: http://creativecommons.org/licenses/by/4.0/legalcode
  • IsSequenced: True
  • AssociatedSequences: https://www.ebi.ac.uk/ena/browser/api/embl/JAFKEC010000000
  • Identifiers:
    • 0:
      • Identifier: JAFKEC010000000
  • Media:
  • Facts:
  • Relations:
  • IsInCluster: False
  • Class: Gammaproteobacteria
  • CountryCode: ES
  • RecordedByIDs:
  • IdentifiedByIDs:
  • Country: Spain
  • GbifRegion: EUROPE
  • PublishedByGbifRegion: EUROPE
  • Identifier: JAFKEC010000000
  • TaxonConceptID: https://www.ebi.ac.uk/ena/browser/view/Taxon:2815362
  • AssociatedTaxa: Nicotiana glauca
  • Locality: Las palmas
  • OccurrenceRemarks: Pseudomonas sp. BBB001, whole genome shotgun sequencing project.
  • GbifID: 3347408719
  • OccurrenceID: JAFKEC010000000

  • Taxonmaps:
    • @ref: 69479
    • File name: preview.99_953.png
    • Url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_23;96_61;97_89;98_642;99_953&stattab=map
    • Last taxonomy: Pseudomonas
    • 16S sequence: MW009702
    • Sequence Identity: None
    • Total samples: 7450
    • Soil counts: 1775
    • Aquatic counts: 2210
    • Animal counts: 2599
    • Plant counts: 866

  • 16S sequences:
    • @ref: 20215
    • Description: Pseudomonas palmensis strain BBB001 16S ribosomal RNA gene, partial sequence
    • Accession: MW009702
    • Length: 1541
    • Database: nuccore
    • NCBI tax ID: 2815362
  • Genome sequences:
    • @ref: 66792
    • Description: Pseudomonas palmensis BBB001
    • Accession: GCA_017848315
    • Assembly level: scaffold
    • Database: ncbi
    • NCBI tax ID: 2815362

  • Lineage: cellular organisms; Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas
  • LineageEx:
    • Taxon:
      • 0:
        • TaxId: 131567
        • ScientificName: cellular organisms
        • Rank: no rank
      • 1:
        • TaxId: 2
        • ScientificName: Bacteria
        • Rank: superkingdom
      • 2:
        • TaxId: 1224
        • ScientificName: Pseudomonadota
        • Rank: phylum
      • 3:
        • TaxId: 1236
        • ScientificName: Gammaproteobacteria
        • Rank: class
      • 4:
        • TaxId: 72274
        • ScientificName: Pseudomonadales
        • Rank: order
      • 5:
        • TaxId: 135621
        • ScientificName: Pseudomonadaceae
        • Rank: family
      • 6:
        • TaxId: 286
        • ScientificName: Pseudomonas
        • Rank: genus