BioRepo | Biosample

General Information

Title

Inacc No : InaCC B1369, Scientific Name: Chromobacterium sp.

Organism

Chromobacterium sp.

Sample Type

Microbe

Description

External Links

Description	URL
None

Sample Information

Sample Attribute

Sample Name	InaCC B1369
Sample Title	Inacc No : InaCC B1369, Scientific Name: Chromobacterium sp.
Description
Taxonomy ID	306190
Bioproject Id
Locus Tag Prefix
Strain	Chromobacterium sp. KR15-11
Isolate
Isolation Source	Fluid of Nepenthes ampullaria
Host
Lab Host
Biomaterial Provider
Sample Type	cell culture
Collection Date	N/A
Geographic Location Name	Indonesia: KEPRI, Betina Mount, Karimun Besar
Latitude Longitude
Environmental Biome
Depth
Altitude
Collected By
Culture Collection	Indonesian Culture Collection (InaCC) B1369
Genotype
Host Tissue Sampled
Identified By
Mating Type
Passage History
Sample Size
Serotype
Serovar
Specimen Voucher
Temperature	25-30
Organism	3097
Growth Media	R2A / NA

Center

Direktorat Pengelolaan Laboratorium, Fasilitas Riset, dan Kawasan Sains dan Teknologi

Lab

Pusat Sekuensing

Submitter

Lab Pusat Sekuensing - BRIN

Submitted at

26-09-2024

Published at

02-10-2024

Other Information

Key: 4510627500
DatasetKey: 405434d2-6194-4b15-8798-c50e5223004c
PublishingOrgKey: cccff716-2694-4209-9f9e-2f7a484465a0
InstallationKey: 68845aab-a453-4816-b36d-a3ec8455deb0
HostingOrganizationKey: c4f66525-4d36-4c18-82ac-98e088f54db4
PublishingCountry: CO
Protocol: EML
LastCrawled: 2025-03-29T06:21:28.491+00:00
LastParsed: 2025-04-03T13:58:41.947+00:00
CrawlId: 1
ProjectId: Microsudaqua
Extensions:
- Http://rs.gbif.org/terms/1.0/DNADerivedData:
  - 0:
    - Https://w3id.org/mixs/0000045: V3, V4
    - Https://w3id.org/mixs/0000050: Illumina
    - Https://w3id.org/mixs/0000046: Fw, Ry
    - Https://w3id.org/mixs/0000044: 16S rRNA
    - Https://w3id.org/mixs/0001225: MiSeq. 2x150pb o 2x250pb, cobertura de 30.000 paired-end reads por muestra
- Http://data.ggbn.org/schemas/ggbn/terms/Amplification:
  - 0:
    - Http://data.ggbn.org/schemas/ggbn/terms/amplificationMethod: El ADN comunitario fue extraído usando el kit MoBio PowerWater (Qiagen) siguiendo el protocolo del fabricante. Nombre, secuencia y referencia de los primers Fw y Rv que se usaron para secuenciar el 16S del bacterioplancton de los sistemas acuáticos de Colombia.
    - Http://data.ggbn.org/schemas/ggbn/terms/primerReferenceCitationForward: Klindworth A, Pruesse E, Schweer T, Peplies J, Quast C, Horn M, Glöckner FO. Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies. Nucleic Acids Res. 2013 Jan 7;41(1):e1. doi: 10.1093/nar/gks808. Epub 2012 Aug 28. PMID: 22933715; PMCID: PMC3592464.
    - Http://data.ggbn.org/schemas/ggbn/terms/primerNameReverse: 785R
    - Http://data.ggbn.org/schemas/ggbn/terms/primerSequenceForward: CCTACGGGNGGCWGCAG
    - Http://data.ggbn.org/schemas/ggbn/terms/primerNameForward: 341F
    - Http://data.ggbn.org/schemas/ggbn/terms/primerSequenceReverse: GACTACHVGGGTATCTAATCC
- Http://data.ggbn.org/schemas/ggbn/terms/Permit:
  - 0:
    - Http://data.ggbn.org/schemas/ggbn/terms/permitText: ANLA:0524:2014:UDEA
    - Http://data.ggbn.org/schemas/ggbn/terms/permitStatus: Permiso vigente
    - Http://data.ggbn.org/schemas/ggbn/terms/permitType: Permiso para la recolección de especímenes de especies silvestres
BasisOfRecord: HUMAN_OBSERVATION
OccurrenceStatus: PRESENT
TaxonKey: 7657319
KingdomKey: 3
PhylumKey: 111
ClassKey: 362
OrderKey: 648
FamilyKey: 9179888
GenusKey: 7657319
AcceptedTaxonKey: 7657319
ScientificName: Chromobacterium Bergonzini, 1880
AcceptedScientificName: Chromobacterium Bergonzini, 1880
Kingdom: Bacteria
Phylum: Proteobacteria
Order: Burkholderiales
Family: Chromobacteriaceae
Genus: Chromobacterium
GenericName: Chromobacterium
TaxonRank: GENUS
TaxonomicStatus: ACCEPTED
DecimalLatitude: 7.249683
DecimalLongitude: -75.444996
Elevation: 131.0
ElevationAccuracy: 0.0
Continent: SOUTH_AMERICA
StateProvince: Antioquia
Gadm:
- Level0:
  - Gid: COL
  - Name: Colombia
- Level1:
  - Gid: COL.2_2
  - Name: Antioquia
- Level2:
  - Gid: COL.2.59_2
  - Name: Ituango
WaterBody: Quebrada La Guamera
Year: 2022
Month: 4
Day: 21
EventDate: 2022-04-21
StartDayOfYear: 111
EndDayOfYear: 111
Issues:
- 0: COORDINATE_ROUNDED
LastInterpreted: 2025-04-03T13:58:41.947+00:00
License: http://creativecommons.org/licenses/by-nc/4.0/legalcode
OrganismQuantity: 1.0
OrganismQuantityType: Muestra
SampleSizeUnit: Litros
SampleSizeValue: 2.0
IsSequenced: True
Identifiers:
- 0:
  - Identifier: UdeA:BACTERIOPLANCTON:W1041199
Media:
Facts:
Relations:
IsInCluster: False
RecordedBy: Maria Carolina Garcia Chaves|Juan Pablo Niño Garcia
IdentifiedBy: Juan Pablo Niño
Preparations: Colecta definitiva: secuencia de un fragmento del gen ribosomal 16S
SamplingProtocol: Punto de muestreo
DnaSequenceID:
- 0: None
GeodeticDatum: WGS84
Class: Gammaproteobacteria
CountryCode: CO
RecordedByIDs:
- 0:
  - Type: ORCID
  - Value: https://orcid.org/0000-0003-1610-3998
- 1:
  - Type: ORCID
  - Value: https://orcid.org/0000-0002-7600-533X
IdentifiedByIDs:
- 0:
  - Type: ORCID
  - Value: https://orcid.org/0000-0003-1610-3998
GbifRegion: LATIN_AMERICA
Country: Colombia
PublishedByGbifRegion: LATIN_AMERICA
RecordNumber: W104
EventID: Antioquia2021
Identifier: UdeA:BACTERIOPLANCTON:W1041199
Habitat: Acuático
VerbatimEventDate: 2022-04-21/2022-04-21
InstitutionID: 890.980.040-8
SamplingEffort: 1 muestra de agua por punto de muestreo
County: Ituango
Locality: Quebrada La Guamera
EventRemarks: Muestra de agua superficial
GbifID: 4510627500
VerbatimLocality: Qda_La_Guamera
Language: es
OccurrenceID: UdeA:BACTERIOPLANCTON:W1041199
Type: Event
InstitutionCode: Universidad de Antioquia (UdeA)
EventTime: 08:00:00/15:00:00
IdentificationRemarks: Identificación completa por secuenciación DNAr16S por Illumina MiSeq
HigherClassification: Bacteria | Proteobacteria | Gammaproteobacteria | Betaproteobacteriales | Chromobacteriaceae | Chromobacterium

Lineage: cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria; Neisseriales; Chromobacteriaceae; Chromobacterium; unclassified Chromobacterium
LineageEx:
- Taxon:
  - 0:
    - TaxId: 131567
    - ScientificName: cellular organisms
    - Rank: cellular root
  - 1:
    - TaxId: 2
    - ScientificName: Bacteria
    - Rank: domain
  - 2:
    - TaxId: 3379134
    - ScientificName: Pseudomonadati
    - Rank: kingdom
  - 3:
    - TaxId: 1224
    - ScientificName: Pseudomonadota
    - Rank: phylum
  - 4:
    - TaxId: 28216
    - ScientificName: Betaproteobacteria
    - Rank: class
  - 5:
    - TaxId: 206351
    - ScientificName: Neisseriales
    - Rank: order
  - 6:
    - TaxId: 1499392
    - ScientificName: Chromobacteriaceae
    - Rank: family
  - 7:
    - TaxId: 535
    - ScientificName: Chromobacterium
    - Rank: genus
  - 8:
    - TaxId: 2641838
    - ScientificName: unclassified Chromobacterium
    - Rank: no rank

General Information

Sample Information

Other Information

Occurence (geoference records)

Name and taxonomic classification