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General Information
Title Inacc No : InaCC B1452, Scientific Name: Citrobacter sp.
Organism Citrobacter sp.
Sample Type Microbe
Description
External Links
Description URL
None

Sample Information
Sample Attribute
Sample Name InaCC B1452
Sample Title Inacc No : InaCC B1452, Scientific Name: Citrobacter sp.
Description
Taxonomy ID 1896336
Bioproject Id
Locus Tag Prefix
Strain Citrobacter sp. PS.CBN 1.1
Isolate
Isolation Source Infected banana stem
Host
Lab Host
Biomaterial Provider
Sample Type cell culture
Collection Date N/A
Geographic Location Name Indonesia: West Java, Cibinong, Kab. Bogor
Latitude Longitude
Environmental Biome
Depth
Altitude
Collected By Masrukhin
Culture Collection Indonesian Culture Collection (InaCC) B1452
Genotype
Host Tissue Sampled
Identified By
Mating Type
Passage History
Sample Size
Serotype
Serovar
Specimen Voucher
Temperature 30
Organism 3089
Growth Media NA
Center Direktorat Pengelolaan Laboratorium, Fasilitas Riset, dan Kawasan Sains dan Teknologi
Lab Pusat Sekuensing
Submitter Lab Pusat Sekuensing - BRIN
Submitted at 26-09-2024
Published at 02-10-2024

Other Information

  • Culture temp:
    • @ref: 67770
    • Growth: positive
    • Type: growth
    • Temperature: 37

  • Taxonmaps:
    • @ref: 69479
    • File name: preview.99_363.png
    • Url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_6;96_7;97_7;98_307;99_363&stattab=map
    • Last taxonomy: Enterobacteriaceae
    • 16S sequence: LC504019
    • Sequence Identity: None
    • Total samples: 2518
    • Soil counts: 59
    • Aquatic counts: 191
    • Animal counts: 2129
    • Plant counts: 139

  • 16S sequences:
    • @ref: 67770
    • Description: Citrobacter sp. JCM 7161 gene for 16S ribosomal RNA, partial sequence
    • Accession: LC504019
    • Length: 1464
    • Database: nuccore
    • NCBI tax ID: 1896336

  • Key: 5140024076
  • DatasetKey: 50c9509d-22c7-4a22-a47d-8c48425ef4a7
  • PublishingOrgKey: 28eb1a3f-1c15-4a95-931a-4af90ecb574d
  • InstallationKey: 997448a8-f762-11e1-a439-00145eb45e9a
  • HostingOrganizationKey: 28eb1a3f-1c15-4a95-931a-4af90ecb574d
  • PublishingCountry: US
  • Protocol: DWC_ARCHIVE
  • LastCrawled: 2025-06-24T16:48:00.587+00:00
  • LastParsed: 2025-06-25T04:46:57.897+00:00
  • CrawlId: 551
  • ProjectId: https://www.inaturalist.org/projects/human-hosts|https://www.inaturalist.org/projects/microscopy|https://www.inaturalist.org/projects/new-york-city-ecoflora
  • Extensions:
    • Http://rs.gbif.org/terms/1.0/Multimedia:
      • 0:
        • Http://purl.org/dc/terms/references: https://www.inaturalist.org/photos/490227687
        • Http://purl.org/dc/terms/created: 2025-04-23T13:30:29-07:00
        • Http://rs.tdwg.org/dwc/terms/catalogNumber: 490227687
        • Http://purl.org/dc/terms/identifier: https://inaturalist-open-data.s3.amazonaws.com/photos/490227687/original.jpg
        • Http://purl.org/dc/terms/format: image/jpeg
        • Http://purl.org/dc/terms/rightsHolder: Ansel Oommen
        • Http://purl.org/dc/terms/creator: Ansel Oommen
        • Http://purl.org/dc/terms/license: http://creativecommons.org/licenses/by-nc/4.0/
        • Http://purl.org/dc/terms/type: StillImage
        • Http://purl.org/dc/terms/publisher: iNaturalist
      • 1:
        • Http://purl.org/dc/terms/references: https://www.inaturalist.org/photos/490227643
        • Http://purl.org/dc/terms/created: 2025-04-23T13:26:17-07:00
        • Http://rs.tdwg.org/dwc/terms/catalogNumber: 490227643
        • Http://purl.org/dc/terms/identifier: https://inaturalist-open-data.s3.amazonaws.com/photos/490227643/original.jpg
        • Http://purl.org/dc/terms/format: image/jpeg
        • Http://purl.org/dc/terms/rightsHolder: Ansel Oommen
        • Http://purl.org/dc/terms/creator: Ansel Oommen
        • Http://purl.org/dc/terms/license: http://creativecommons.org/licenses/by-nc/4.0/
        • Http://purl.org/dc/terms/type: StillImage
        • Http://purl.org/dc/terms/publisher: iNaturalist
  • BasisOfRecord: HUMAN_OBSERVATION
  • OccurrenceStatus: PRESENT
  • TaxonKey: 10732598
  • KingdomKey: 3
  • PhylumKey: 111
  • ClassKey: 362
  • OrderKey: 10801383
  • FamilyKey: 4899
  • GenusKey: 3221787
  • SpeciesKey: 10732598
  • AcceptedTaxonKey: 10732598
  • ScientificName: Citrobacter freundii_E
  • AcceptedScientificName: Citrobacter freundii_E
  • Kingdom: Bacteria
  • Phylum: Proteobacteria
  • Order: Enterobacterales
  • Family: Enterobacteriaceae
  • Genus: Citrobacter
  • Species: Citrobacter freundii
  • GenericName: Citrobacter
  • SpecificEpithet: freundii
  • TaxonRank: SPECIES
  • TaxonomicStatus: ACCEPTED
  • DateIdentified: 2025-04-23T17:30:30
  • DecimalLatitude: 40.841311
  • DecimalLongitude: -73.94067
  • Continent: NORTH_AMERICA
  • StateProvince: New York
  • Gadm:
    • Level0:
      • Gid: USA
      • Name: United States
    • Level1:
      • Gid: USA.33_1
      • Name: New York
    • Level2:
      • Gid: USA.33.32_1
      • Name: New York
  • Year: 2025
  • Month: 4
  • Day: 14
  • EventDate: 2025-04-14
  • StartDayOfYear: 104
  • EndDayOfYear: 104
  • Issues:
    • 0: CONTINENT_DERIVED_FROM_COORDINATES
    • 1: TAXON_MATCH_TAXON_ID_IGNORED
  • Modified: 2025-04-23T19:40:42.000+00:00
  • LastInterpreted: 2025-06-25T04:46:57.897+00:00
  • References: https://www.inaturalist.org/observations/272484742
  • License: http://creativecommons.org/licenses/by-nc/4.0/legalcode
  • IsSequenced: False
  • Identifiers:
    • 0:
      • Identifier: 272484742
  • Media:
    • 0:
      • Type: StillImage
      • Format: image/jpeg
      • References: https://www.inaturalist.org/photos/490227687
      • Created: 2025-04-23T20:30:29.000+00:00
      • Creator: Ansel Oommen
      • Publisher: iNaturalist
      • License: http://creativecommons.org/licenses/by-nc/4.0/
      • RightsHolder: Ansel Oommen
      • Identifier: https://inaturalist-open-data.s3.amazonaws.com/photos/490227687/original.jpg
    • 1:
      • Type: StillImage
      • Format: image/jpeg
      • References: https://www.inaturalist.org/photos/490227643
      • Created: 2025-04-23T20:26:17.000+00:00
      • Creator: Ansel Oommen
      • Publisher: iNaturalist
      • License: http://creativecommons.org/licenses/by-nc/4.0/
      • RightsHolder: Ansel Oommen
      • Identifier: https://inaturalist-open-data.s3.amazonaws.com/photos/490227643/original.jpg
  • Facts:
  • Relations:
  • IsInCluster: False
  • DatasetName: iNaturalist research-grade observations
  • RecordedBy: Ansel Oommen
  • IdentifiedBy: Ansel Oommen
  • DnaSequenceID:
  • GeodeticDatum: WGS84
  • Class: Gammaproteobacteria
  • CountryCode: US
  • RecordedByIDs:
  • IdentifiedByIDs:
  • GbifRegion: NORTH_AMERICA
  • Country: United States of America
  • PublishedByGbifRegion: NORTH_AMERICA
  • RightsHolder: Ansel Oommen
  • Identifier: 272484742
  • Http://unknown.org/nick: ansel_oommen
  • VerbatimEventDate: 2025-04-14
  • CollectionCode: Observations
  • GbifID: 5140024076
  • VerbatimLocality: Columbia University Medical Center
  • OccurrenceID: https://www.inaturalist.org/observations/272484742
  • TaxonID: 1433771
  • Http://unknown.org/captive cultivated: wild
  • CatalogNumber: 272484742
  • InstitutionCode: iNaturalist
  • OccurrenceRemarks: Gram stain of Citrobacter freundii complex bacteremia; IDed by MALDI-TOF
  • IdentificationID: 617010232

  • Lineage: cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Citrobacter; unclassified Citrobacter
  • LineageEx:
    • Taxon:
      • 0:
        • TaxId: 131567
        • ScientificName: cellular organisms
        • Rank: cellular root
      • 1:
        • TaxId: 2
        • ScientificName: Bacteria
        • Rank: domain
      • 2:
        • TaxId: 3379134
        • ScientificName: Pseudomonadati
        • Rank: kingdom
      • 3:
        • TaxId: 1224
        • ScientificName: Pseudomonadota
        • Rank: phylum
      • 4:
        • TaxId: 1236
        • ScientificName: Gammaproteobacteria
        • Rank: class
      • 5:
        • TaxId: 91347
        • ScientificName: Enterobacterales
        • Rank: order
      • 6:
        • TaxId: 543
        • ScientificName: Enterobacteriaceae
        • Rank: family
      • 7:
        • TaxId: 544
        • ScientificName: Citrobacter
        • Rank: genus
      • 8:
        • TaxId: 2644389
        • ScientificName: unclassified Citrobacter
        • Rank: no rank