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General Information
Title Inacc No : InaCC B35, Scientific Name: Citrobacter sp.
Organism Citrobacter sp.
Sample Type Microbe
Description
External Links
Description URL
None

Sample Information
Sample Attribute
Sample Name InaCC B35
Sample Title Inacc No : InaCC B35, Scientific Name: Citrobacter sp.
Description
Taxonomy ID 1896336
Bioproject Id
Locus Tag Prefix
Strain Citrobacter sp. PLeW2D
Isolate
Isolation Source Leaf
Host
Lab Host
Biomaterial Provider
Sample Type cell culture
Collection Date N/A
Geographic Location Name Indonesia:South East Sulawesi, Protected Forest Papalia, South Konawe
Latitude Longitude
Environmental Biome
Depth
Altitude
Collected By Agustinus Joko N
Culture Collection Indonesian Culture Collection (InaCC) B35
Genotype
Host Tissue Sampled
Identified By
Mating Type
Passage History
Sample Size
Serotype
Serovar
Specimen Voucher
Temperature 30
Organism 3089
Growth Media NA/TSA
Center Direktorat Pengelolaan Laboratorium, Fasilitas Riset, dan Kawasan Sains dan Teknologi
Lab Pusat Sekuensing
Submitter Lab Pusat Sekuensing - BRIN
Submitted at 26-09-2024
Published at 02-10-2024

Other Information

  • Culture temp:
    • @ref: 67770
    • Growth: positive
    • Type: growth
    • Temperature: 37

  • Taxonmaps:
    • @ref: 69479
    • File name: preview.99_363.png
    • Url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_6;96_7;97_7;98_307;99_363&stattab=map
    • Last taxonomy: Enterobacteriaceae
    • 16S sequence: LC504019
    • Sequence Identity: None
    • Total samples: 2518
    • Soil counts: 59
    • Aquatic counts: 191
    • Animal counts: 2129
    • Plant counts: 139

  • 16S sequences:
    • @ref: 67770
    • Description: Citrobacter sp. JCM 7161 gene for 16S ribosomal RNA, partial sequence
    • Accession: LC504019
    • Length: 1464
    • Database: nuccore
    • NCBI tax ID: 1896336

  • Key: 5140024076
  • DatasetKey: 50c9509d-22c7-4a22-a47d-8c48425ef4a7
  • PublishingOrgKey: 28eb1a3f-1c15-4a95-931a-4af90ecb574d
  • InstallationKey: 997448a8-f762-11e1-a439-00145eb45e9a
  • HostingOrganizationKey: 28eb1a3f-1c15-4a95-931a-4af90ecb574d
  • PublishingCountry: US
  • Protocol: DWC_ARCHIVE
  • LastCrawled: 2025-06-24T16:48:00.587+00:00
  • LastParsed: 2025-06-25T04:46:57.897+00:00
  • CrawlId: 551
  • ProjectId: https://www.inaturalist.org/projects/human-hosts|https://www.inaturalist.org/projects/microscopy|https://www.inaturalist.org/projects/new-york-city-ecoflora
  • Extensions:
    • Http://rs.gbif.org/terms/1.0/Multimedia:
      • 0:
        • Http://purl.org/dc/terms/references: https://www.inaturalist.org/photos/490227687
        • Http://purl.org/dc/terms/created: 2025-04-23T13:30:29-07:00
        • Http://rs.tdwg.org/dwc/terms/catalogNumber: 490227687
        • Http://purl.org/dc/terms/identifier: https://inaturalist-open-data.s3.amazonaws.com/photos/490227687/original.jpg
        • Http://purl.org/dc/terms/format: image/jpeg
        • Http://purl.org/dc/terms/rightsHolder: Ansel Oommen
        • Http://purl.org/dc/terms/creator: Ansel Oommen
        • Http://purl.org/dc/terms/license: http://creativecommons.org/licenses/by-nc/4.0/
        • Http://purl.org/dc/terms/type: StillImage
        • Http://purl.org/dc/terms/publisher: iNaturalist
      • 1:
        • Http://purl.org/dc/terms/references: https://www.inaturalist.org/photos/490227643
        • Http://purl.org/dc/terms/created: 2025-04-23T13:26:17-07:00
        • Http://rs.tdwg.org/dwc/terms/catalogNumber: 490227643
        • Http://purl.org/dc/terms/identifier: https://inaturalist-open-data.s3.amazonaws.com/photos/490227643/original.jpg
        • Http://purl.org/dc/terms/format: image/jpeg
        • Http://purl.org/dc/terms/rightsHolder: Ansel Oommen
        • Http://purl.org/dc/terms/creator: Ansel Oommen
        • Http://purl.org/dc/terms/license: http://creativecommons.org/licenses/by-nc/4.0/
        • Http://purl.org/dc/terms/type: StillImage
        • Http://purl.org/dc/terms/publisher: iNaturalist
  • BasisOfRecord: HUMAN_OBSERVATION
  • OccurrenceStatus: PRESENT
  • TaxonKey: 10732598
  • KingdomKey: 3
  • PhylumKey: 111
  • ClassKey: 362
  • OrderKey: 10801383
  • FamilyKey: 4899
  • GenusKey: 3221787
  • SpeciesKey: 10732598
  • AcceptedTaxonKey: 10732598
  • ScientificName: Citrobacter freundii_E
  • AcceptedScientificName: Citrobacter freundii_E
  • Kingdom: Bacteria
  • Phylum: Proteobacteria
  • Order: Enterobacterales
  • Family: Enterobacteriaceae
  • Genus: Citrobacter
  • Species: Citrobacter freundii
  • GenericName: Citrobacter
  • SpecificEpithet: freundii
  • TaxonRank: SPECIES
  • TaxonomicStatus: ACCEPTED
  • DateIdentified: 2025-04-23T17:30:30
  • DecimalLatitude: 40.841311
  • DecimalLongitude: -73.94067
  • Continent: NORTH_AMERICA
  • StateProvince: New York
  • Gadm:
    • Level0:
      • Gid: USA
      • Name: United States
    • Level1:
      • Gid: USA.33_1
      • Name: New York
    • Level2:
      • Gid: USA.33.32_1
      • Name: New York
  • Year: 2025
  • Month: 4
  • Day: 14
  • EventDate: 2025-04-14
  • StartDayOfYear: 104
  • EndDayOfYear: 104
  • Issues:
    • 0: CONTINENT_DERIVED_FROM_COORDINATES
    • 1: TAXON_MATCH_TAXON_ID_IGNORED
  • Modified: 2025-04-23T19:40:42.000+00:00
  • LastInterpreted: 2025-06-25T04:46:57.897+00:00
  • References: https://www.inaturalist.org/observations/272484742
  • License: http://creativecommons.org/licenses/by-nc/4.0/legalcode
  • IsSequenced: False
  • Identifiers:
    • 0:
      • Identifier: 272484742
  • Media:
    • 0:
      • Type: StillImage
      • Format: image/jpeg
      • References: https://www.inaturalist.org/photos/490227687
      • Created: 2025-04-23T20:30:29.000+00:00
      • Creator: Ansel Oommen
      • Publisher: iNaturalist
      • License: http://creativecommons.org/licenses/by-nc/4.0/
      • RightsHolder: Ansel Oommen
      • Identifier: https://inaturalist-open-data.s3.amazonaws.com/photos/490227687/original.jpg
    • 1:
      • Type: StillImage
      • Format: image/jpeg
      • References: https://www.inaturalist.org/photos/490227643
      • Created: 2025-04-23T20:26:17.000+00:00
      • Creator: Ansel Oommen
      • Publisher: iNaturalist
      • License: http://creativecommons.org/licenses/by-nc/4.0/
      • RightsHolder: Ansel Oommen
      • Identifier: https://inaturalist-open-data.s3.amazonaws.com/photos/490227643/original.jpg
  • Facts:
  • Relations:
  • IsInCluster: False
  • DatasetName: iNaturalist research-grade observations
  • RecordedBy: Ansel Oommen
  • IdentifiedBy: Ansel Oommen
  • DnaSequenceID:
  • GeodeticDatum: WGS84
  • Class: Gammaproteobacteria
  • CountryCode: US
  • RecordedByIDs:
  • IdentifiedByIDs:
  • GbifRegion: NORTH_AMERICA
  • Country: United States of America
  • PublishedByGbifRegion: NORTH_AMERICA
  • RightsHolder: Ansel Oommen
  • Identifier: 272484742
  • Http://unknown.org/nick: ansel_oommen
  • VerbatimEventDate: 2025-04-14
  • CollectionCode: Observations
  • GbifID: 5140024076
  • VerbatimLocality: Columbia University Medical Center
  • OccurrenceID: https://www.inaturalist.org/observations/272484742
  • TaxonID: 1433771
  • Http://unknown.org/captive cultivated: wild
  • CatalogNumber: 272484742
  • InstitutionCode: iNaturalist
  • OccurrenceRemarks: Gram stain of Citrobacter freundii complex bacteremia; IDed by MALDI-TOF
  • IdentificationID: 617010232

  • Lineage: cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Citrobacter; unclassified Citrobacter
  • LineageEx:
    • Taxon:
      • 0:
        • TaxId: 131567
        • ScientificName: cellular organisms
        • Rank: cellular root
      • 1:
        • TaxId: 2
        • ScientificName: Bacteria
        • Rank: domain
      • 2:
        • TaxId: 3379134
        • ScientificName: Pseudomonadati
        • Rank: kingdom
      • 3:
        • TaxId: 1224
        • ScientificName: Pseudomonadota
        • Rank: phylum
      • 4:
        • TaxId: 1236
        • ScientificName: Gammaproteobacteria
        • Rank: class
      • 5:
        • TaxId: 91347
        • ScientificName: Enterobacterales
        • Rank: order
      • 6:
        • TaxId: 543
        • ScientificName: Enterobacteriaceae
        • Rank: family
      • 7:
        • TaxId: 544
        • ScientificName: Citrobacter
        • Rank: genus
      • 8:
        • TaxId: 2644389
        • ScientificName: unclassified Citrobacter
        • Rank: no rank