General Information

Title Inacc No : InaCC B386, Scientific Name: Acetobacter ghanensis
Organism Acetobacter ghanensis
Sample Type Microbe
Description
External Links
Description URL
None

Sample Information

Sample Attribute
Sample Name InaCC B386
Sample Title Inacc No : InaCC B386, Scientific Name: Acetobacter ghanensis
Description
Taxonomy ID 431306
Bioproject Id
Locus Tag Prefix
Strain Acetobacter ghanensis IDI-A023
Isolate
Isolation Source Fermentasi kakao
Host
Lab Host
Biomaterial Provider
Sample Type cell culture
Collection Date N/A
Geographic Location Name Indonesia:East java, PTPN XII, Jember
Latitude Longitude
Environmental Biome
Depth
Altitude
Collected By P. Lisdiyanti
Culture Collection Indonesian Culture Collection (InaCC) B386
Genotype
Host Tissue Sampled
Identified By
Mating Type
Passage History
Sample Size
Serotype
Serovar
Specimen Voucher
Temperature 30
Organism 1025
Growth Media GYP
Center Direktorat Pengelolaan Laboratorium, Fasilitas Riset, dan Kawasan Sains dan Teknologi
Lab Pusat Sekuensing
Submitter Lab Pusat Sekuensing - BRIN
Submitted at 26-09-2024
Published at 02-10-2024

Other Information

  • Cell morphology:
    • @ref: 23237
    • Gram stain: negative
    • Cell length: 1.5-2.5 µm
    • Cell width: 0.8 µm
    • Cell shape: rod-shaped
  • Colony morphology:
    • @ref: 23237
    • Colony size: 0.8 mm
    • Colony color: beige
    • Colony shape: circular
    • Incubation period: 4 days
    • Medium used: MYP agar

  • Culture medium:
    • 0:
      • @ref: 7761
      • Name: MANNITOL-YEAST EXTRACT-PEPTONE (DSMZ Medium 1087)
      • Growth: yes
      • Link: https://mediadive.dsmz.de/medium/1087
      • Composition: Name: MANNITOL-YEAST EXTRACT-PEPTONE (MYP) (DSMZ Medium 1087) Composition: D-Mannitol 25.0 g/l Agar 15.0 g/l Yeast extract 5.0 g/l Peptone 3.0 g/l Distilled water
    • 1:
      • @ref: 23237
      • Name: MYP agar
      • Growth: yes
      • Composition: 2.5 % (w/v) D-mannitol, 0.5 % (w/v) yeast extract and 0.3 % (w/v) bacteriological peptone (Oxoid)
  • Culture temp:
    • @ref: 7761
    • Growth: positive
    • Type: growth
    • Temperature: 30

  • Tolerance:
    • @ref: 23237
    • Compound: Ethanol
    • Percentage: 10
  • Metabolite utilization:
    • 0:
      • @ref: 23237
      • Chebi-ID: 17306
      • Metabolite: maltose
      • Utilization activity: -
      • Kind of utilization tested: carbon source
    • 1:
      • @ref: 23237
      • Chebi-ID: 17790
      • Metabolite: methanol
      • Utilization activity: -
      • Kind of utilization tested: carbon source
    • 2:
      • @ref: 23237
      • Chebi-ID: 17754
      • Metabolite: glycerol
      • Utilization activity: +
      • Kind of utilization tested: carbon source
    • 3:
      • @ref: 23237
      • Chebi-ID: 16236
      • Metabolite: ethanol
      • Utilization activity: +
      • Kind of utilization tested: oxidation
  • Metabolite production:
    • 0:
      • @ref: 23237
      • Chebi-ID: 17426
      • Metabolite: 5-dehydro-D-gluconate
      • Production: no
    • 1:
      • @ref: 23237
      • Chebi-ID: 16808
      • Metabolite: 2-dehydro-D-gluconate
      • Production: no
    • 2:
      • @ref: 23237
      • Chebi-ID: 18391
      • Metabolite: D-gluconate
      • Production: yes

  • Isolation:
    • @ref: 7761
    • Sample type: traditional heap fermentation of Ghanaian cocoa beans
    • Country: Ghana
    • Origin.country: GHA
    • Continent: Africa
  • Isolation source categories:
    • 0:
      • Cat1: #Engineered
      • Cat2: #Food production
      • Cat3: #Food
    • 1:
      • Cat1: #Host Body-Site
      • Cat2: #Plant
      • Cat3: #Fruit (Seed)
  • Taxonmaps:
    • @ref: 69479
    • File name: preview.99_1246.png
    • Url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_29;96_152;97_163;98_985;99_1246&stattab=map
    • Last taxonomy: Acetobacter
    • 16S sequence: AB665083
    • Sequence Identity: None
    • Total samples: 3246
    • Soil counts: 352
    • Aquatic counts: 428
    • Animal counts: 2157
    • Plant counts: 309

  • Risk assessment:
    • @ref: 7761
    • Biosafety level: 1
    • Biosafety level comment: Risk group (German classification)

  • 16S sequences:
    • 0:
      • @ref: 20218
      • Description: Acetobacter ghanensis gene for 16S rRNA, partial sequence, strain: LMG 23848
      • Accession: AB665083
      • Length: 1412
      • Database: nuccore
      • NCBI tax ID: 431306
    • 1:
      • @ref: 7761
      • Description: Acetobacter ghanensis strain 430A 16S ribosomal RNA gene, partial sequence
      • Accession: EF030713
      • Length: 1442
      • Database: nuccore
      • NCBI tax ID: 431306
  • Genome sequences:
    • 0:
      • @ref: 66792
      • Description: Acetobacter ghanensis LMG 23848
      • Accession: GCA_011516865
      • Assembly level: contig
      • Database: ncbi
      • NCBI tax ID: 431306
    • 1:
      • @ref: 66792
      • Description: Acetobacter ghanensis strain LMG 23848
      • Accession: 431306.8
      • Assembly level: wgs
      • Database: patric
      • NCBI tax ID: 431306
    • 2:
      • @ref: 66792
      • Description: Acetobacter ghanensis LMG 23848
      • Accession: 2675903422
      • Assembly level: complete
      • Database: img
      • NCBI tax ID: 431306
  • GC content:
    • 0:
      • @ref: 7761
      • GC-content: 57.3
    • 1:
      • @ref: 23237
      • GC-content: 57.30
      • Method: high performance liquid chromatography (HPLC)

  • Key: 4152770987
  • DatasetKey: d8cd16ba-bb74-4420-821e-083f2bac17c2
  • PublishingOrgKey: ada9d123-ddb4-467d-8891-806ea8d94230
  • InstallationKey: 17a83780-3060-4851-9d6f-029d5fcb81c9
  • HostingOrganizationKey: fbca90e3-8aed-48b1-84e3-369afbd000ce
  • PublishingCountry: GB
  • Protocol: EML
  • LastCrawled: 2025-06-28T12:04:10.659+00:00
  • LastParsed: 2025-06-28T12:31:41.473+00:00
  • CrawlId: 226
  • Extensions:
  • BasisOfRecord: MATERIAL_SAMPLE
  • OccurrenceStatus: PRESENT
  • TaxonKey: 7681380
  • KingdomKey: 3
  • PhylumKey: 111
  • ClassKey: 197
  • OrderKey: 10742767
  • FamilyKey: 4728
  • GenusKey: 3221519
  • SpeciesKey: 7681380
  • AcceptedTaxonKey: 7681380
  • ScientificName: Acetobacter ghanensis Cleenwerck et al., 2007
  • AcceptedScientificName: Acetobacter ghanensis Cleenwerck et al., 2007
  • Kingdom: Bacteria
  • Phylum: Proteobacteria
  • Order: Acetobacterales
  • Family: Acetobacteraceae
  • Genus: Acetobacter
  • Species: Acetobacter ghanensis
  • GenericName: Acetobacter
  • SpecificEpithet: ghanensis
  • TaxonRank: SPECIES
  • TaxonomicStatus: ACCEPTED
  • IucnRedListCategory: NE
  • Continent: AFRICA
  • Gadm:
  • Year: 2023
  • Month: 4
  • Day: 3
  • EventDate: 2023-04-03
  • StartDayOfYear: 93
  • EndDayOfYear: 93
  • Issues:
    • 0: CONTINENT_DERIVED_FROM_COUNTRY
    • 1: TAXON_MATCH_TAXON_CONCEPT_ID_IGNORED
    • 2: TAXON_MATCH_TAXON_ID_IGNORED
  • LastInterpreted: 2025-06-28T12:31:41.473+00:00
  • References: https://www.ebi.ac.uk/ena/browser/view/OQ891778
  • License: http://creativecommons.org/licenses/by/4.0/legalcode
  • IsSequenced: True
  • AssociatedSequences: https://www.ebi.ac.uk/ena/browser/api/embl/OQ891778
  • Identifiers:
    • 0:
      • Identifier: OQ891778
  • Media:
  • Facts:
  • Relations:
  • IsInCluster: False
  • DnaSequenceID:
  • Class: Alphaproteobacteria
  • CountryCode: NG
  • RecordedByIDs:
  • IdentifiedByIDs:
  • GbifRegion: AFRICA
  • Country: Nigeria
  • PublishedByGbifRegion: EUROPE
  • Identifier: OQ891778
  • TaxonConceptID: https://www.ebi.ac.uk/ena/browser/view/Taxon:431306
  • GbifID: 4152770987
  • OccurrenceRemarks: Acetobacter ghanensis strain chromosome:1 16S ribosomal RNA gene, partial sequence.
  • OccurrenceID: OQ891778
  • TaxonID: ASV:81be823b79068b649ba4cf934d00b977

  • Lineage: cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Acetobacterales; Acetobacteraceae; Acetobacter
  • LineageEx:
    • Taxon:
      • 0:
        • TaxId: 131567
        • ScientificName: cellular organisms
        • Rank: cellular root
      • 1:
        • TaxId: 2
        • ScientificName: Bacteria
        • Rank: domain
      • 2:
        • TaxId: 3379134
        • ScientificName: Pseudomonadati
        • Rank: kingdom
      • 3:
        • TaxId: 1224
        • ScientificName: Pseudomonadota
        • Rank: phylum
      • 4:
        • TaxId: 28211
        • ScientificName: Alphaproteobacteria
        • Rank: class
      • 5:
        • TaxId: 3120395
        • ScientificName: Acetobacterales
        • Rank: order
      • 6:
        • TaxId: 433
        • ScientificName: Acetobacteraceae
        • Rank: family
      • 7:
        • TaxId: 434
        • ScientificName: Acetobacter
        • Rank: genus