General Information

Title Inacc No : InaCC A1015, Scientific Name: Streptomyces fagopyri
Organism Streptomyces fagopyri
Sample Type Microbe
Description
External Links
Description URL
None

Sample Information

Sample Attribute
Sample Name InaCC A1015
Sample Title Inacc No : InaCC A1015, Scientific Name: Streptomyces fagopyri
Description
Taxonomy ID 2662397
Bioproject Id
Locus Tag Prefix
Strain Streptomyces fagopyri SBSSD 8(2)
Isolate
Isolation Source Fresh water sediment
Host
Lab Host
Biomaterial Provider
Sample Type cell culture
Collection Date N/A
Geographic Location Name Indonesia:Sarambung, desa kondokbakaru, Mamasa
Latitude Longitude
Environmental Biome
Depth
Altitude
Collected By
Culture Collection Indonesian Culture Collection (InaCC) A1015
Genotype
Host Tissue Sampled
Identified By
Mating Type
Passage History
Sample Size
Serotype
Serovar
Specimen Voucher
Temperature 30
Organism 3132
Growth Media YSA
Center Direktorat Pengelolaan Laboratorium, Fasilitas Riset, dan Kawasan SainsĀ danĀ Teknologi
Lab Pusat Sekuensing
Submitter Lab Pusat Sekuensing - BRIN
Submitted at 26-09-2024
Published at 02-10-2024

Other Information

  • Key: 3346310100
  • DatasetKey: d8cd16ba-bb74-4420-821e-083f2bac17c2
  • PublishingOrgKey: ada9d123-ddb4-467d-8891-806ea8d94230
  • InstallationKey: 17a83780-3060-4851-9d6f-029d5fcb81c9
  • HostingOrganizationKey: fbca90e3-8aed-48b1-84e3-369afbd000ce
  • PublishingCountry: GB
  • Protocol: EML
  • LastCrawled: 2024-10-19T12:05:58.350+00:00
  • LastParsed: 2024-10-19T12:51:50.837+00:00
  • CrawlId: 189
  • Extensions:
  • BasisOfRecord: MATERIAL_SAMPLE
  • OccurrenceStatus: PRESENT
  • TaxonKey: 11422635
  • KingdomKey: 3
  • PhylumKey: 10813635
  • ClassKey: 10701801
  • OrderKey: 10857265
  • FamilyKey: 8091
  • GenusKey: 2584528
  • SpeciesKey: 11422635
  • AcceptedTaxonKey: 11422635
  • ScientificName: Streptomyces fagopyri
  • AcceptedScientificName: Streptomyces fagopyri
  • Kingdom: Bacteria
  • Phylum: Actinobacteriota
  • Order: Streptomycetales
  • Family: Streptomycetaceae
  • Genus: Streptomyces
  • Species: Streptomyces fagopyri
  • GenericName: Streptomyces
  • SpecificEpithet: fagopyri
  • TaxonRank: SPECIES
  • TaxonomicStatus: ACCEPTED
  • IucnRedListCategory: NE
  • Continent: ASIA
  • Gadm:
  • Year: 2018
  • Month: 10
  • Day: 10
  • EventDate: 2018-10-10
  • StartDayOfYear: 283
  • EndDayOfYear: 283
  • Issues:
    • 0: CONTINENT_DERIVED_FROM_COUNTRY
    • 1: TAXON_MATCH_TAXON_CONCEPT_ID_IGNORED
    • 2: TAXON_MATCH_TAXON_ID_IGNORED
  • LastInterpreted: 2024-10-19T12:51:50.837+00:00
  • References: https://www.ebi.ac.uk/ena/browser/view/CP045643
  • License: http://creativecommons.org/licenses/by/4.0/legalcode
  • IsSequenced: True
  • AssociatedSequences: https://www.ebi.ac.uk/ena/browser/api/embl/CP045643
  • Identifiers:
    • 0:
      • Identifier: CP045643
  • Media:
  • Facts:
  • Relations:
  • IsInCluster: False
  • Class: Actinomycetia
  • CountryCode: CN
  • RecordedByIDs:
  • IdentifiedByIDs:
  • Country: China
  • GbifRegion: ASIA
  • PublishedByGbifRegion: EUROPE
  • Identifier: CP045643
  • TaxonConceptID: https://www.ebi.ac.uk/ena/browser/view/Taxon:2662397
  • Locality: Loudi City
  • OccurrenceRemarks: Streptomyces sp. QMT-28 chromosome, complete genome.
  • GbifID: 3346310100
  • OccurrenceID: CP045643
  • TaxonID: ASV:782f6bd6b013c02e5037520ac9b213a8

  • Culture temp:
    • @ref: 67770
    • Growth: positive
    • Type: growth
    • Temperature: 28

  • Observation:
    • @ref: 67770
    • Observation: quinones: MK-9, MK-9(H<sub>2</sub>), MK-9(H<sub>4</sub>), MK-9(H<sub>6</sub>) and MK-9(H<sub>8</sub>)

  • Isolation:
    • @ref: 67770
    • Sample type: Rhizosphere soil of <I>Fagopyrum dibotrys</I> from Shuangfeng
    • Host species: Fagopyrum dibotrys
    • Geographic location: Hunan Province
    • Country: China
    • Origin.country: CHN
    • Continent: Asia

  • 16S sequences:
    • @ref: 67770
    • Description: Streptomyces fagopyri strain QMT-28 16S ribosomal RNA gene, partial sequence
    • Accession: MN044908
    • Length: 1389
    • Database: nuccore
    • NCBI tax ID: 2662397
  • Genome sequences:
    • @ref: 67770
    • Description: Streptomyces fagopyri QMT-28
    • Accession: GCA_009498275
    • Assembly level: complete
    • Database: ncbi
    • NCBI tax ID: 2662397
  • GC content:
    • @ref: 67770
    • GC-content: 71.2
    • Method: genome sequence analysis

  • Lineage: cellular organisms; Bacteria; Terrabacteria group; Actinomycetota; Actinomycetes; Kitasatosporales; Streptomycetaceae; Streptomyces
  • LineageEx:
    • Taxon:
      • 0:
        • TaxId: 131567
        • ScientificName: cellular organisms
        • Rank: no rank
      • 1:
        • TaxId: 2
        • ScientificName: Bacteria
        • Rank: superkingdom
      • 2:
        • TaxId: 1783272
        • ScientificName: Terrabacteria group
        • Rank: clade
      • 3:
        • TaxId: 201174
        • ScientificName: Actinomycetota
        • Rank: phylum
      • 4:
        • TaxId: 1760
        • ScientificName: Actinomycetes
        • Rank: class
      • 5:
        • TaxId: 85011
        • ScientificName: Kitasatosporales
        • Rank: order
      • 6:
        • TaxId: 2062
        • ScientificName: Streptomycetaceae
        • Rank: family
      • 7:
        • TaxId: 1883
        • ScientificName: Streptomyces
        • Rank: genus