BioRepo | Biosample

Other Information

Cell morphology:
- 0:
  - @ref: 67942
  - Gram stain: negative
  - Cell length: 1.1-2.6 µm
  - Cell width: 0.8-1.1 µm
  - Cell shape: rod-shaped
  - Motility: yes
- 1:
  - @ref: 67942
  - Flagellum arrangement: monotrichous, polar
Colony morphology:
- @ref: 67942
- Colony size: 1.5-2.0 mm
- Colony color: white
- Colony shape: circular
- Incubation period: 1.5 days
- Medium used: Marine agar (MA)

Culture temp:
- 0:
  - @ref: 67942
  - Growth: positive
  - Type: growth
  - Temperature: 15-37
- 1:
  - @ref: 67942
  - Growth: positive
  - Type: optimum
  - Temperature: 33
Culture pH:
- 0:
  - @ref: 67942
  - Ability: positive
  - Type: growth
  - PH: 6.0-8.5
  - PH range: alkaliphile
- 1:
  - @ref: 67942
  - Ability: positive
  - Type: optimum
  - PH: 7.0.-7.5

Oxygen tolerance:
- @ref: 67942
- Oxygen tolerance: facultative anaerobe
Halophily:
- 0:
  - @ref: 67942
  - Salt: NaCl
  - Growth: positive
  - Tested relation: growth
  - Concentration: 1.0-6.0 %(w/v)
- 1:
  - @ref: 67942
  - Salt: NaCl
  - Growth: positive
  - Tested relation: optimum
  - Concentration: 3.0-3.5 %(w/v)
Observation:
- @ref: 67942
- Observation: Swarming motility is observed
Metabolite utilization:
- 0:
  - @ref: 67942
  - Chebi-ID: 17632
  - Metabolite: nitrate
  - Utilization activity: +
  - Kind of utilization tested: reduction
- 1:
  - @ref: 67942
  - Chebi-ID: 16199
  - Metabolite: urea
  - Utilization activity: -
  - Kind of utilization tested: hydrolysis
- 2:
  - @ref: 67942
  - Chebi-ID: 5291
  - Metabolite: gelatin
  - Utilization activity: -
  - Kind of utilization tested: hydrolysis
- 3:
  - @ref: 67942
  - Chebi-ID: 28017
  - Metabolite: starch
  - Utilization activity: -
  - Kind of utilization tested: hydrolysis
- 4:
  - @ref: 67942
  - Metabolite: casein
  - Utilization activity: -
  - Kind of utilization tested: hydrolysis
- 5:
  - @ref: 67942
  - Chebi-ID: 16991
  - Metabolite: dna
  - Utilization activity: -
  - Kind of utilization tested: hydrolysis
- 6:
  - @ref: 67942
  - Chebi-ID: 58187
  - Metabolite: alginate
  - Utilization activity: -
  - Kind of utilization tested: hydrolysis
- 7:
  - @ref: 67942
  - Chebi-ID: 62968
  - Metabolite: cellulose
  - Utilization activity: -
  - Kind of utilization tested: hydrolysis
- 8:
  - @ref: 67942
  - Chebi-ID: 53424
  - Metabolite: tween 20
  - Utilization activity: -
  - Kind of utilization tested: hydrolysis
- 9:
  - @ref: 67942
  - Chebi-ID: 53423
  - Metabolite: tween 40
  - Utilization activity: -
  - Kind of utilization tested: hydrolysis
- 10:
  - @ref: 67942
  - Chebi-ID: 53425
  - Metabolite: tween 60
  - Utilization activity: -
  - Kind of utilization tested: hydrolysis
- 11:
  - @ref: 67942
  - Chebi-ID: 53426
  - Metabolite: tween 80
  - Utilization activity: -
  - Kind of utilization tested: hydrolysis
- 12:
  - @ref: 67942
  - Metabolite: esculin ferric citrate
  - Utilization activity: +
  - Kind of utilization tested: builds acid from
- 13:
  - @ref: 67942
  - Chebi-ID: 65327
  - Metabolite: D-xylose
  - Utilization activity: -
  - Kind of utilization tested: builds acid from
- 14:
  - @ref: 67942
  - Chebi-ID: 16988
  - Metabolite: D-ribose
  - Utilization activity: +
  - Kind of utilization tested: builds acid from
- 15:
  - @ref: 67942
  - Metabolite: potassium 5-dehydro-D-gluconate
  - Utilization activity: +
  - Kind of utilization tested: builds acid from
- 16:
  - @ref: 67942
  - Chebi-ID: 30849
  - Metabolite: L-arabinose
  - Utilization activity: -
  - Kind of utilization tested: builds acid from
- 17:
  - @ref: 67942
  - Chebi-ID: 16443
  - Metabolite: D-tagatose
  - Utilization activity: -
  - Kind of utilization tested: builds acid from
- 18:
  - @ref: 67942
  - Chebi-ID: 17634
  - Metabolite: D-glucose
  - Utilization activity: +
  - Kind of utilization tested: builds acid from
- 19:
  - @ref: 67942
  - Chebi-ID: 17306
  - Metabolite: maltose
  - Utilization activity: +
  - Kind of utilization tested: builds acid from
- 20:
  - @ref: 67942
  - Metabolite: potassium 2-dehydro-D-gluconate
  - Utilization activity: +
  - Kind of utilization tested: builds acid from
- 21:
  - @ref: 67942
  - Chebi-ID: 27082
  - Metabolite: trehalose
  - Utilization activity: +
  - Kind of utilization tested: builds acid from
- 22:
  - @ref: 67942
  - Chebi-ID: 32528
  - Metabolite: turanose
  - Utilization activity: +
  - Kind of utilization tested: builds acid from
- 23:
  - @ref: 67942
  - Chebi-ID: 12936
  - Metabolite: D-galactose
  - Utilization activity: +
  - Kind of utilization tested: builds acid from
- 24:
  - @ref: 67942
  - Chebi-ID: 15824
  - Metabolite: D-fructose
  - Utilization activity: +
  - Kind of utilization tested: builds acid from
- 25:
  - @ref: 67942
  - Chebi-ID: 17992
  - Metabolite: sucrose
  - Utilization activity: +
  - Kind of utilization tested: builds acid from
- 26:
  - @ref: 67942
  - Chebi-ID: 17057
  - Metabolite: cellobiose
  - Utilization activity: +
  - Kind of utilization tested: builds acid from
- 27:
  - @ref: 67942
  - Chebi-ID: 28053
  - Metabolite: melibiose
  - Utilization activity: -
  - Kind of utilization tested: builds acid from
- 28:
  - @ref: 67942
  - Chebi-ID: 18305
  - Metabolite: arbutin
  - Utilization activity: -
  - Kind of utilization tested: builds acid from
- 29:
  - @ref: 67942
  - Chebi-ID: 16024
  - Metabolite: D-mannose
  - Utilization activity: +
  - Kind of utilization tested: builds acid from
- 30:
  - @ref: 67942
  - Chebi-ID: 17814
  - Metabolite: salicin
  - Utilization activity: +
  - Kind of utilization tested: builds acid from
- 31:
  - @ref: 67942
  - Chebi-ID: 17716
  - Metabolite: lactose
  - Utilization activity: -
  - Kind of utilization tested: builds acid from
- 32:
  - @ref: 67942
  - Chebi-ID: 16899
  - Metabolite: D-mannitol
  - Utilization activity: +
  - Kind of utilization tested: builds acid from
- 33:
  - @ref: 67942
  - Chebi-ID: 28087
  - Metabolite: glycogen
  - Utilization activity: +
  - Kind of utilization tested: builds acid from
- 34:
  - @ref: 67942
  - Chebi-ID: 28017
  - Metabolite: starch
  - Utilization activity: -
  - Kind of utilization tested: builds acid from
- 35:
  - @ref: 67942
  - Chebi-ID: 17108
  - Metabolite: D-arabinose
  - Utilization activity: -
  - Kind of utilization tested: builds acid from
- 36:
  - @ref: 67942
  - Chebi-ID: 6731
  - Metabolite: melezitose
  - Utilization activity: -
  - Kind of utilization tested: builds acid from
- 37:
  - @ref: 67942
  - Chebi-ID: 18287
  - Metabolite: L-fucose
  - Utilization activity: -
  - Kind of utilization tested: builds acid from
- 38:
  - @ref: 67942
  - Chebi-ID: 62345
  - Metabolite: L-rhamnose
  - Utilization activity: -
  - Kind of utilization tested: builds acid from
- 39:
  - @ref: 67942
  - Chebi-ID: 28066
  - Metabolite: gentiobiose
  - Utilization activity: +
  - Kind of utilization tested: builds acid from
- 40:
  - @ref: 67942
  - Chebi-ID: 17924
  - Metabolite: D-sorbitol
  - Utilization activity: -
  - Kind of utilization tested: builds acid from
- 41:
  - @ref: 67942
  - Chebi-ID: 18333
  - Metabolite: D-arabitol
  - Utilization activity: +
  - Kind of utilization tested: builds acid from
- 42:
  - @ref: 67942
  - Chebi-ID: 62318
  - Metabolite: D-lyxose
  - Utilization activity: -
  - Kind of utilization tested: builds acid from
- 43:
  - @ref: 67942
  - Chebi-ID: 28847
  - Metabolite: D-fucose
  - Utilization activity: -
  - Kind of utilization tested: builds acid from
- 44:
  - @ref: 67942
  - Chebi-ID: 17754
  - Metabolite: glycerol
  - Utilization activity: -
  - Kind of utilization tested: builds acid from
- 45:
  - @ref: 67942
  - Chebi-ID: 59640
  - Metabolite: N-acetylglucosamine
  - Utilization activity: +
  - Kind of utilization tested: builds acid from
- 46:
  - @ref: 67942
  - Chebi-ID: 320061
  - Metabolite: methyl alpha-D-glucopyranoside
  - Utilization activity: -
  - Kind of utilization tested: builds acid from
- 47:
  - @ref: 67942
  - Chebi-ID: 17268
  - Metabolite: myo-inositol
  - Utilization activity: -
  - Kind of utilization tested: builds acid from
- 48:
  - @ref: 67942
  - Chebi-ID: 32032
  - Metabolite: potassium gluconate
  - Utilization activity: -
  - Kind of utilization tested: builds acid from
- 49:
  - @ref: 67942
  - Chebi-ID: 74863
  - Metabolite: methyl beta-D-xylopyranoside
  - Utilization activity: -
  - Kind of utilization tested: builds acid from
- 50:
  - @ref: 67942
  - Chebi-ID: 16634
  - Metabolite: raffinose
  - Utilization activity: -
  - Kind of utilization tested: builds acid from
- 51:
  - @ref: 67942
  - Chebi-ID: 27613
  - Metabolite: amygdalin
  - Utilization activity: -
  - Kind of utilization tested: builds acid from
- 52:
  - @ref: 67942
  - Chebi-ID: 43943
  - Metabolite: methyl alpha-D-mannoside
  - Utilization activity: -
  - Kind of utilization tested: builds acid from
- 53:
  - @ref: 67942
  - Chebi-ID: 17113
  - Metabolite: erythritol
  - Utilization activity: -
  - Kind of utilization tested: builds acid from
- 54:
  - @ref: 67942
  - Chebi-ID: 65328
  - Metabolite: L-xylose
  - Utilization activity: -
  - Kind of utilization tested: builds acid from
- 55:
  - @ref: 67942
  - Chebi-ID: 15963
  - Metabolite: ribitol
  - Utilization activity: -
  - Kind of utilization tested: builds acid from
- 56:
  - @ref: 67942
  - Chebi-ID: 17266
  - Metabolite: L-sorbose
  - Utilization activity: -
  - Kind of utilization tested: builds acid from
- 57:
  - @ref: 67942
  - Chebi-ID: 16813
  - Metabolite: galactitol
  - Utilization activity: -
  - Kind of utilization tested: builds acid from
- 58:
  - @ref: 67942
  - Chebi-ID: 15443
  - Metabolite: inulin
  - Utilization activity: -
  - Kind of utilization tested: builds acid from
- 59:
  - @ref: 67942
  - Chebi-ID: 17151
  - Metabolite: xylitol
  - Utilization activity: -
  - Kind of utilization tested: builds acid from
- 60:
  - @ref: 67942
  - Chebi-ID: 18403
  - Metabolite: L-arabitol
  - Utilization activity: -
  - Kind of utilization tested: builds acid from
- 61:
  - @ref: 67942
  - Chebi-ID: 17306
  - Metabolite: maltose
  - Utilization activity: +
  - Kind of utilization tested: oxidation
- 62:
  - @ref: 67942
  - Chebi-ID: 27082
  - Metabolite: trehalose
  - Utilization activity: +
  - Kind of utilization tested: oxidation
- 63:
  - @ref: 67942
  - Chebi-ID: 17057
  - Metabolite: cellobiose
  - Utilization activity: +
  - Kind of utilization tested: oxidation
- 64:
  - @ref: 67942
  - Chebi-ID: 32528
  - Metabolite: turanose
  - Utilization activity: +
  - Kind of utilization tested: oxidation
- 65:
  - @ref: 67942
  - Chebi-ID: 17164
  - Metabolite: stachyose
  - Utilization activity: +
  - Kind of utilization tested: oxidation
- 66:
  - @ref: 67942
  - Chebi-ID: 17634
  - Metabolite: D-glucose
  - Utilization activity: +
  - Kind of utilization tested: oxidation
- 67:
  - @ref: 67942
  - Chebi-ID: 16024
  - Metabolite: D-mannose
  - Utilization activity: +
  - Kind of utilization tested: oxidation
- 68:
  - @ref: 67942
  - Chebi-ID: 15824
  - Metabolite: D-fructose
  - Utilization activity: +
  - Kind of utilization tested: oxidation
- 69:
  - @ref: 67942
  - Chebi-ID: 16899
  - Metabolite: D-mannitol
  - Utilization activity: +
  - Kind of utilization tested: oxidation
- 70:
  - @ref: 67942
  - Chebi-ID: 18333
  - Metabolite: D-arabitol
  - Utilization activity: +
  - Kind of utilization tested: oxidation
- 71:
  - @ref: 67942
  - Chebi-ID: 8391
  - Metabolite: D-gluconate
  - Utilization activity: +
  - Kind of utilization tested: oxidation
- 72:
  - @ref: 67942
  - Chebi-ID: 16947
  - Metabolite: citrate
  - Utilization activity: +
  - Kind of utilization tested: oxidation
Antibiotic resistance:
- 0:
  - @ref: 67942
  - ChEBI: 17698
  - Metabolite: chloramphenicol
  - Is antibiotic: yes
  - Is sensitive: yes
  - Sensitivity conc.: 30 µg
- 1:
  - @ref: 67942
  - ChEBI: 48923
  - Metabolite: erythromycin
  - Is antibiotic: yes
  - Is sensitive: yes
  - Sensitivity conc.: 15 µg
- 2:
  - @ref: 67942
  - ChEBI: 100246
  - Metabolite: norfloxacin
  - Is antibiotic: yes
  - Is sensitive: yes
  - Sensitivity conc.: 10 µg
- 3:
  - @ref: 67942
  - ChEBI: 3498
  - Metabolite: cefotaxime sodium
  - Is antibiotic: yes
  - Is sensitive: yes
  - Sensitivity conc.: 30 µg
- 4:
  - @ref: 67942
  - ChEBI: 53727
  - Metabolite: sulfamethoxydiazine
  - Is antibiotic: yes
  - Is sensitive: yes
  - Sensitivity conc.: 5 µg
- 5:
  - @ref: 67942
  - ChEBI: 17334
  - Metabolite: penicillin
  - Is antibiotic: yes
  - Is sensitive: yes
  - Sensitivity conc.: 10 µg
- 6:
  - @ref: 67942
  - ChEBI: 28864
  - Metabolite: tobramycin
  - Is antibiotic: yes
  - Is sensitive: yes
  - Sensitivity conc.: 10 µg
- 7:
  - @ref: 67942
  - ChEBI: 6472
  - Metabolite: lincomycin
  - Is antibiotic: yes
  - Is sensitive: yes
  - Sensitivity conc.: 2 µg
- 8:
  - @ref: 67942
  - ChEBI: 29007
  - Metabolite: ceftriaxone
  - Is antibiotic: yes
  - Is sensitive: yes
  - Sensitivity conc.: 30 µg
- 9:
  - @ref: 67942
  - ChEBI: 17076
  - Metabolite: streptomycin
  - Is antibiotic: yes
  - Is sensitive: yes
  - Sensitivity conc.: 10 µg
- 10:
  - @ref: 67942
  - ChEBI: 28971
  - Group ID: 20
  - Metabolite: ampicillin
  - Is antibiotic: yes
  - Is sensitive: yes
  - Sensitivity conc.: 10 µg
- 11:
  - @ref: 67942
  - ChEBI: 9321
  - Group ID: 20
  - Metabolite: sulbactam
  - Is antibiotic: yes
  - Is sensitive: yes
  - Sensitivity conc.: 10 µg
- 12:
  - @ref: 67942
  - ChEBI: 17833
  - Metabolite: gentamicin
  - Is antibiotic: yes
  - Is sensitive: yes
  - Sensitivity conc.: 10 µg
- 13:
  - @ref: 67942
  - ChEBI: 7507
  - Metabolite: neomycin
  - Is antibiotic: yes
  - Is sensitive: yes
  - Sensitivity conc.: 30 µg
- 14:
  - @ref: 67942
  - ChEBI: 31168
  - Metabolite: acetylspiramycin
  - Is antibiotic: yes
  - Is resistant: yes
  - Resistance conc.: 30 µg
- 15:
  - @ref: 67942
  - ChEBI: 28001
  - Metabolite: vancomycin
  - Is antibiotic: yes
  - Is resistant: yes
  - Resistance conc.: 30 µg
- 16:
  - @ref: 67942
  - ChEBI: 73908
  - Metabolite: Vibriostatic agent O/129
  - Is antibiotic: yes
  - Is sensitive: yes
  - Sensitivity conc.: 150 µg
Metabolite production:
- 0:
  - @ref: 67942
  - Chebi-ID: 35581
  - Metabolite: indole
  - Production: no
- 1:
  - @ref: 67942
  - Chebi-ID: 16136
  - Metabolite: hydrogen sulfide
  - Production: yes
Enzymes:
- 0:
  - @ref: 67942
  - Value: cytochrome oxidase
  - Activity: +
  - Ec: 1.9.3.1
- 1:
  - @ref: 67942
  - Value: catalase
  - Activity: +
  - Ec: 1.11.1.6
- 2:
  - @ref: 67942
  - Value: alkaline phosphatase
  - Activity: +
  - Ec: 3.1.3.1
- 3:
  - @ref: 67942
  - Value: leucine arylamidase
  - Activity: +
  - Ec: 3.4.11.1
- 4:
  - @ref: 67942
  - Value: naphthol-AS-BI-phosphohydrolase
  - Activity: +
- 5:
  - @ref: 67942
  - Value: alpha-glucosidase
  - Activity: +
  - Ec: 3.2.1.20
- 6:
  - @ref: 67942
  - Value: beta-glucosidase
  - Activity: +
  - Ec: 3.2.1.21
- 7:
  - @ref: 67942
  - Value: esterase (C 4)
  - Activity: -
- 8:
  - @ref: 67942
  - Value: esterase Lipase (C 8)
  - Activity: -
- 9:
  - @ref: 67942
  - Value: lipase (C 14)
  - Activity: -
- 10:
  - @ref: 67942
  - Value: valine arylamidase
  - Activity: -
- 11:
  - @ref: 67942
  - Value: cystine arylamidase
  - Activity: -
  - Ec: 3.4.11.3
- 12:
  - @ref: 67942
  - Value: trypsin
  - Activity: -
  - Ec: 3.4.21.4
- 13:
  - @ref: 67942
  - Value: alpha-galactosidase
  - Activity: -
  - Ec: 3.2.1.22
- 14:
  - @ref: 67942
  - Value: beta-galactosidase
  - Activity: -
  - Ec: 3.2.1.23
- 15:
  - @ref: 67942
  - Value: N-acetyl-beta-glucosaminidase
  - Activity: -
  - Ec: 3.2.1.52
- 16:
  - @ref: 67942
  - Value: alpha-mannosidase
  - Activity: -
  - Ec: 3.2.1.24
- 17:
  - @ref: 67942
  - Value: acid phosphatase
  - Activity: -
  - Ec: 3.1.3.2
- 18:
  - @ref: 67942
  - Value: arginine dihydrolase
  - Activity: -
  - Ec: 3.5.3.6
- 19:
  - @ref: 67942
  - Value: beta-D-fucosidase
  - Activity: -
  - Ec: 3.2.1.38
Fatty acid profile:
- Fatty acids:
  - 0:
    - @ref: 67942
    - Fatty acid: C16:1 w7c/C15:0 ISO 2OH
    - Percentage: 35.5
  - 1:
    - @ref: 67942
    - Fatty acid: C16:0
    - Percentage: 24
  - 2:
    - @ref: 67942
    - Fatty acid: C18:1 w7c / C18:1 w6c
    - Percentage: 18
  - 3:
    - @ref: 67942
    - Fatty acid: C14:0
    - Percentage: 4.3
  - 4:
    - @ref: 67942
    - Fatty acid: C12:0 3OH
    - Percentage: 4.1
  - 5:
    - @ref: 67942
    - Fatty acid: C14:0 3OH/C16:1 ISO I
    - Percentage: 2.6
  - 6:
    - @ref: 67942
    - Fatty acid: C17:1 ISO I/C17:1 anteiso B
    - Percentage: 2.3
  - 7:
    - @ref: 67942
    - Fatty acid: C18:0
    - Percentage: 1.4
  - 8:
    - @ref: 67942
    - Fatty acid: C12:0
    - Percentage: 1.2
- Type of FA analysis: whole cell analysis
- Incubation medium: MB
- Incubation temperature: 33
- Incubation time: 1.5
- Software version: Sherlock 6.0
- Library/peak naming table: RTSBA6
- System: MIS MIDI
- Cutoff value: None

Isolation:
- @ref: 67942
- Sample type: coastal marine sediment
- Geographic location: Weihai
- Country: China
- Origin.country: CHN
- Continent: Asia
- Latitude: 36.91
- Longitude: 122.243
Taxonmaps:
- @ref: 69479
- File name: preview.99_168118.png
- Url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_14;96_43228;97_55322;98_110301;99_168118&stattab=map
- Last taxonomy: Vibrio
- 16S sequence: KY458806
- Sequence Identity: None
- Total samples: 77
- Soil counts: 5
- Aquatic counts: 54
- Animal counts: 15
- Plant counts: 3

16S sequences:
- @ref: 67942
- Description: Vibrio albus strain E4404 16S ribosomal RNA gene, partial sequence
- Accession: KY458806
- Length: 1476
- Database: nuccore
- NCBI tax ID: 678
Genome sequences:
- @ref: 67942
- Description: Vibrio albus E4404
- Accession: GCA_003144035
- Assembly level: contig
- Database: ncbi
- NCBI tax ID: 2200953
GC content:
- @ref: 67942
- GC-content: 46.1
- Method: genome sequence analysis

Lineage: cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; unclassified Vibrio
LineageEx:
- Taxon:
  - 0:
    - TaxId: 131567
    - ScientificName: cellular organisms
    - Rank: cellular root
  - 1:
    - TaxId: 2
    - ScientificName: Bacteria
    - Rank: domain
  - 2:
    - TaxId: 3379134
    - ScientificName: Pseudomonadati
    - Rank: kingdom
  - 3:
    - TaxId: 1224
    - ScientificName: Pseudomonadota
    - Rank: phylum
  - 4:
    - TaxId: 1236
    - ScientificName: Gammaproteobacteria
    - Rank: class
  - 5:
    - TaxId: 135623
    - ScientificName: Vibrionales
    - Rank: order
  - 6:
    - TaxId: 641
    - ScientificName: Vibrionaceae
    - Rank: family
  - 7:
    - TaxId: 662
    - ScientificName: Vibrio
    - Rank: genus
  - 8:
    - TaxId: 2614977
    - ScientificName: unclassified Vibrio
    - Rank: no rank

General Information

Sample Information

Other Information

General Information

Sample Information

Other Information

Morphology

Culture and growth conditions

Physiology and metabolism

Isolation, sampling and environmental information

Sequence information

Name and taxonomic classification