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General Information
Title Inacc No : InaCC A972, Scientific Name: Dactylosporangium cerinum
Organism Dactylosporangium cerinum
Sample Type Microbe
Description
External Links
Description URL
None

Sample Information
Sample Attribute
Sample Name InaCC A972
Sample Title Inacc No : InaCC A972, Scientific Name: Dactylosporangium cerinum
Description
Taxonomy ID 1434730
Bioproject Id
Locus Tag Prefix
Strain Dactylosporangium cerinum
Isolate
Isolation Source Rhizosphere soil of Podocarpus imricatus
Host
Lab Host
Biomaterial Provider
Sample Type cell culture
Collection Date N/A
Geographic Location Name Indonesia:Wanggameti National Park, Sumba Island, East Nusa Tenggara
Latitude Longitude
Environmental Biome
Depth
Altitude
Collected By
Culture Collection Indonesian Culture Collection (InaCC) A972
Genotype
Host Tissue Sampled
Identified By
Mating Type
Passage History
Sample Size
Serotype
Serovar
Specimen Voucher
Temperature 30
Organism 3131
Growth Media YSA
Center Direktorat Pengelolaan Laboratorium, Fasilitas Riset, dan Kawasan Sains dan Teknologi
Lab Pusat Sekuensing
Submitter Lab Pusat Sekuensing - BRIN
Submitted at 26-09-2024
Published at 02-10-2024

Other Information

  • Colony morphology:
    • 0:
      • @ref: 69464
      • Colony color: Daffodil yellow (1007)
      • Medium used: ISP 2
    • 1:
      • @ref: 69464
      • Colony color: Ivory (1014)
      • Medium used: ISP 6
    • 2:
      • @ref: 69464
      • Colony color: Ivory (1014), golden yellow (1024)
      • Medium used: suter with tyrosine
    • 3:
      • @ref: 69464
      • Colony color: Ivory (1014), golden yellow (1024)
      • Medium used: suter without tyrosine
    • 4:
      • @ref: 69464
      • Colony color: Light ivory (1015)
      • Medium used: ISP 5
    • 5:
      • @ref: 69464
      • Colony color: Light ivory (1015), ochre yellow (1024)
      • Medium used: ISP 7
    • 6:
      • @ref: 69464
      • Colony color: Pastel yellow (1034)
      • Medium used: ISP 3
    • 7:
      • @ref: 69464
      • Colony color: Saffron yellow (1017)
      • Medium used: ISP 4
  • Multicellular morphology:
    • 0:
      • @ref: 69464
      • Forms multicellular complex: no
      • Complex name: Aerial mycelium
      • Medium name: ISP 2
    • 1:
      • @ref: 69464
      • Forms multicellular complex: no
      • Complex name: Aerial mycelium
      • Medium name: ISP 3
    • 2:
      • @ref: 69464
      • Forms multicellular complex: no
      • Complex name: Aerial mycelium
      • Medium name: ISP 4
    • 3:
      • @ref: 69464
      • Forms multicellular complex: no
      • Complex name: Aerial mycelium
      • Medium name: ISP 5
    • 4:
      • @ref: 69464
      • Forms multicellular complex: no
      • Complex name: Aerial mycelium
      • Medium name: ISP 6
    • 5:
      • @ref: 69464
      • Forms multicellular complex: no
      • Complex name: Aerial mycelium
      • Medium name: ISP 7
    • 6:
      • @ref: 69464
      • Forms multicellular complex: no
      • Complex name: Aerial mycelium
      • Medium name: suter with tyrosine
    • 7:
      • @ref: 69464
      • Forms multicellular complex: no
      • Complex name: Aerial mycelium
      • Medium name: suter without tyrosine
  • Pigmentation:
    • 0:
      • @ref: 69464
      • Production: no
      • Name: Melanin
    • 1:
      • @ref: 69464
      • Production: yes
      • Color: Golden yellow (1004), beige (1001)
      • Name: soluble pigment
  • Multimedia:
    • @ref: 21568
    • Multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_46712.jpg
    • Caption: Medium 554 28°C
    • Intellectual property rights: © Leibniz-Institut DSMZ

  • Culture medium:
    • 0:
      • @ref: 21568
      • Name: N-Z-AMINE-MEDIUM (DSMZ Medium 554)
      • Growth: yes
      • Link: https://mediadive.dsmz.de/medium/554
      • Composition: Name: N-Z-AMINE-MEDIUM (DSMZ Medium 554) Composition: Starch 20.0 g/l Agar 20.0 g/l Glucose 10.0 g/l N-Z amine 5.0 g/l Yeast extract 5.0 g/l CaCO3 1.0 g/l Distilled water
    • 1:
      • @ref: 21568
      • Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
      • Growth: yes
      • Link: https://mediadive.dsmz.de/medium/65
      • Composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
    • 2:
      • @ref: 21568
      • Name: CZAPEK PEPTONE AGAR (DSMZ Medium 83)
      • Growth: yes
      • Link: https://mediadive.dsmz.de/medium/83
      • Composition: Name: CZAPEK PEPTONE AGAR (DSMZ Medium 83) Composition: Sucrose 30.0 g/l Agar 20.0 g/l Peptone 5.0 g/l NaNO3 3.0 g/l Yeast extract 2.0 g/l K2HPO4 1.0 g/l MgSO4 x 7 H2O 0.5 g/l KCl 0.5 g/l FeSO4 x 7 H2O 0.01 g/l Distilled water
  • Culture temp:
    • 0:
      • @ref: 21568
      • Growth: positive
      • Type: growth
      • Temperature: 28
    • 1:
      • @ref: 67770
      • Growth: positive
      • Type: growth
      • Temperature: 28

  • Halophily:
    • @ref: 69464
    • Salt: NaCl
    • Growth: positive
    • Tested relation: growth
    • Concentration: 0 %
  • Observation:
    • @ref: 67770
    • Observation: quinones: MK-9(H<sub>8</sub>), MK-9(H<sub>6</sub>)
  • Metabolite utilization:
    • 0:
      • @ref: 69464
      • Chebi-ID: 22599
      • Metabolite: arabinose
      • Utilization activity: +
      • Kind of utilization tested: growth
    • 1:
      • @ref: 68379
      • Chebi-ID: 28087
      • Metabolite: glycogen
      • Utilization activity: -
      • Kind of utilization tested: fermentation
    • 2:
      • @ref: 68379
      • Chebi-ID: 17992
      • Metabolite: sucrose
      • Utilization activity: -
      • Kind of utilization tested: fermentation
    • 3:
      • @ref: 68379
      • Chebi-ID: 17306
      • Metabolite: maltose
      • Utilization activity: -
      • Kind of utilization tested: fermentation
    • 4:
      • @ref: 68379
      • Chebi-ID: 65327
      • Metabolite: D-xylose
      • Utilization activity: +
      • Kind of utilization tested: fermentation
    • 5:
      • @ref: 68379
      • Chebi-ID: 16899
      • Metabolite: D-mannitol
      • Utilization activity: +
      • Kind of utilization tested: fermentation
    • 6:
      • @ref: 68379
      • Chebi-ID: 16988
      • Metabolite: D-ribose
      • Utilization activity: -
      • Kind of utilization tested: fermentation
    • 7:
      • @ref: 68379
      • Chebi-ID: 17634
      • Metabolite: D-glucose
      • Utilization activity: +
      • Kind of utilization tested: fermentation
    • 8:
      • @ref: 68379
      • Chebi-ID: 5291
      • Metabolite: gelatin
      • Utilization activity: -
      • Kind of utilization tested: hydrolysis
    • 9:
      • @ref: 68379
      • Chebi-ID: 17632
      • Metabolite: nitrate
      • Utilization activity: -
      • Kind of utilization tested: reduction
    • 10:
      • @ref: 69464
      • Chebi-ID: 62968
      • Metabolite: cellulose
      • Utilization activity: +/-
      • Kind of utilization tested: growth
    • 11:
      • @ref: 69464
      • Chebi-ID: 28757
      • Metabolite: fructose
      • Utilization activity: +
      • Kind of utilization tested: growth
    • 12:
      • @ref: 69464
      • Chebi-ID: 17234
      • Metabolite: glucose
      • Utilization activity: +
      • Kind of utilization tested: growth
    • 13:
      • @ref: 69464
      • Chebi-ID: 17268
      • Metabolite: inositol
      • Utilization activity: +/-
      • Kind of utilization tested: growth
    • 14:
      • @ref: 69464
      • Chebi-ID: 37684
      • Metabolite: mannose
      • Utilization activity: +
      • Kind of utilization tested: growth
    • 15:
      • @ref: 69464
      • Chebi-ID: 16634
      • Metabolite: raffinose
      • Utilization activity: +
      • Kind of utilization tested: growth
    • 16:
      • @ref: 69464
      • Chebi-ID: 26546
      • Metabolite: rhamnose
      • Utilization activity: +
      • Kind of utilization tested: growth
    • 17:
      • @ref: 69464
      • Chebi-ID: 17992
      • Metabolite: sucrose
      • Utilization activity: +
      • Kind of utilization tested: growth
    • 18:
      • @ref: 69464
      • Chebi-ID: 18222
      • Metabolite: xylose
      • Utilization activity: +
      • Kind of utilization tested: growth
    • 19:
      • @ref: 68379
      • Chebi-ID: 17716
      • Metabolite: lactose
      • Utilization activity: -
      • Kind of utilization tested: fermentation
    • 20:
      • @ref: 68379
      • Chebi-ID: 16199
      • Metabolite: urea
      • Utilization activity: -
      • Kind of utilization tested: hydrolysis
    • 21:
      • @ref: 68379
      • Chebi-ID: 4853
      • Metabolite: esculin
      • Utilization activity: +
      • Kind of utilization tested: hydrolysis
  • Enzymes:
    • 0:
      • @ref: 68382
      • Value: alpha-fucosidase
      • Activity: -
      • Ec: 3.2.1.51
    • 1:
      • @ref: 68382
      • Value: N-acetyl-beta-glucosaminidase
      • Activity: +
      • Ec: 3.2.1.52
    • 2:
      • @ref: 68382
      • Value: beta-glucosidase
      • Activity: +
      • Ec: 3.2.1.21
    • 3:
      • @ref: 68382
      • Value: beta-glucuronidase
      • Activity: -
      • Ec: 3.2.1.31
    • 4:
      • @ref: 68382
      • Value: alpha-glucosidase
      • Activity: +
      • Ec: 3.2.1.20
    • 5:
      • @ref: 68382
      • Value: beta-galactosidase
      • Activity: +
      • Ec: 3.2.1.23
    • 6:
      • @ref: 68382
      • Value: alpha-chymotrypsin
      • Activity: -
      • Ec: 3.4.21.1
    • 7:
      • @ref: 68382
      • Value: acid phosphatase
      • Activity: +
      • Ec: 3.1.3.2
    • 8:
      • @ref: 68382
      • Value: cystine arylamidase
      • Activity: -
      • Ec: 3.4.11.3
    • 9:
      • @ref: 68382
      • Value: leucine arylamidase
      • Activity: +
      • Ec: 3.4.11.1
    • 10:
      • @ref: 68382
      • Value: alkaline phosphatase
      • Activity: +
      • Ec: 3.1.3.1
    • 11:
      • @ref: 68382
      • Value: lipase (C 14)
      • Activity: -
    • 12:
      • @ref: 68379
      • Value: beta-galactosidase
      • Activity: -
      • Ec: 3.2.1.23
    • 13:
      • @ref: 68379
      • Value: beta-glucuronidase
      • Activity: -
      • Ec: 3.2.1.31
    • 14:
      • @ref: 68379
      • Value: alkaline phosphatase
      • Activity: -
      • Ec: 3.1.3.1
    • 15:
      • @ref: 68382
      • Value: alpha-mannosidase
      • Activity: -
      • Ec: 3.2.1.24
    • 16:
      • @ref: 68382
      • Value: trypsin
      • Activity: +
      • Ec: 3.4.21.4
    • 17:
      • @ref: 68379
      • Value: gelatinase
      • Activity: -
    • 18:
      • @ref: 68379
      • Value: urease
      • Activity: -
      • Ec: 3.5.1.5
    • 19:
      • @ref: 68379
      • Value: beta-glucosidase
      • Activity: +
      • Ec: 3.2.1.21
    • 20:
      • @ref: 68379
      • Value: alpha-glucosidase
      • Activity: +
      • Ec: 3.2.1.20
    • 21:
      • @ref: 68379
      • Value: pyrrolidonyl arylamidase
      • Activity: -
      • Ec: 3.4.19.3
    • 22:
      • @ref: 68379
      • Value: pyrazinamidase
      • Activity: +
      • Ec: 3.5.1.B15
  • API coryne:
    • @ref: 69464
    • NIT: -
    • PYZ: +
    • PYRA: -
    • PAL: -
    • Beta GUR: -
    • Beta GAL: -
    • Alpha GLU: +
    • Beta NAG: +/-
    • ESC: +
    • URE: -
    • GEL: -
    • GLU: +
    • RIB: -
    • XYL: +
    • MAN: +
    • MAL: -
    • LAC: -
    • SAC: -
    • GLYG: -
  • API zym:
    • @ref: 69464
    • Alkaline phosphatase: +
    • Esterase: +/-
    • Esterase Lipase: +/-
    • Lipase: -
    • Leucine arylamidase: +
    • Valine arylamidase: +/-
    • Cystine arylamidase: -
    • Trypsin: +
    • Alpha- Chymotrypsin: -
    • Acid phosphatase: +
    • Naphthol-AS-BI-phosphohydrolase: +/-
    • Alpha- Galactosidase: +/-
    • Beta- Galactosidase: +
    • Beta- Glucuronidase: -
    • Alpha- Glucosidase: +
    • Beta- Glucosidase: +
    • N-acetyl-beta- glucosaminidase: +
    • Alpha- Mannosidase: -
    • Alpha- Fucosidase: -

  • Isolation:
    • 0:
      • @ref: 21568
      • Sample type: rhizosphere soil of <i>Pinus koraiensis</i> Sieb. et Zucc.
      • Host species: Pinus koraiensis
      • Geographic location: Heilongjiang Province, Luobei (48°8' N, 130°40'E)
      • Country: China
      • Origin.country: CHN
      • Continent: Asia
      • Latitude: 48.1333
      • Longitude: 130.667
    • 1:
      • @ref: 67770
      • Sample type: Rhizosphere soil of <I>Pinus koraiensis</I> Sieb. et Zucc. from Luobei
      • Host species: Pinus koraiensis
      • Geographic location: Heilongjiang Province, north China
      • Country: China
      • Origin.country: CHN
      • Continent: Asia
  • Isolation source categories:
    • 0:
      • Cat1: #Environmental
      • Cat2: #Terrestrial
      • Cat3: #Soil
    • 1:
      • Cat1: #Host
      • Cat2: #Plants
      • Cat3: #Tree
    • 2:
      • Cat1: #Host Body-Site
      • Cat2: #Plant
      • Cat3: #Rhizosphere
  • Taxonmaps:
    • @ref: 69479
    • File name: preview.99_875.png
    • Url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_94;96_521;97_600;98_690;99_875&stattab=map
    • Last taxonomy: Dactylosporangium
    • 16S sequence: KF928748
    • Sequence Identity: None
    • Total samples: 1735
    • Soil counts: 1581
    • Aquatic counts: 58
    • Animal counts: 75
    • Plant counts: 21

  • Risk assessment:
    • @ref: 21568
    • Biosafety level: 1
    • Biosafety level comment: Risk group (German classification)

  • 16S sequences:
    • @ref: 21568
    • Description: Dactylosporangium cerinum strain NEAU-TPG4 16S ribosomal RNA gene, partial sequence
    • Accession: KF928748
    • Length: 1509
    • Database: nuccore
    • NCBI tax ID: 1434730
  • GC content:
    • @ref: 21568
    • GC-content: 71.4
    • Method: thermal denaturation, midpoint method (Tm)

  • Key: 1831403206
  • DatasetKey: 863efcc4-f762-11e1-a439-00145eb45e9a
  • PublishingOrgKey: 463555b0-d081-11da-ae8f-b8a03c50a862
  • InstallationKey: 60353228-f762-11e1-a439-00145eb45e9a
  • HostingOrganizationKey: 463555b0-d081-11da-ae8f-b8a03c50a862
  • PublishingCountry: DE
  • Protocol: BIOCASE
  • LastCrawled: 2025-01-18T21:09:23.253+00:00
  • LastParsed: 2025-02-09T17:43:15.017+00:00
  • CrawlId: 88
  • Extensions:
  • BasisOfRecord: LIVING_SPECIMEN
  • OccurrenceStatus: PRESENT
  • TaxonKey: 9146186
  • KingdomKey: 3
  • PhylumKey: 10813635
  • ClassKey: 10701801
  • OrderKey: 10877327
  • FamilyKey: 3838
  • GenusKey: 3224595
  • SpeciesKey: 9146186
  • AcceptedTaxonKey: 9146186
  • ScientificName: Dactylosporangium cerinum Liu et al., 2015
  • AcceptedScientificName: Dactylosporangium cerinum Liu et al., 2015
  • Kingdom: Bacteria
  • Phylum: Actinobacteriota
  • Order: Mycobacteriales
  • Family: Micromonosporaceae
  • Genus: Dactylosporangium
  • Species: Dactylosporangium cerinum
  • GenericName: Dactylosporangium
  • SpecificEpithet: cerinum
  • TaxonRank: SPECIES
  • TaxonomicStatus: ACCEPTED
  • IucnRedListCategory: NE
  • DecimalLatitude: 48.1333
  • DecimalLongitude: 130.667
  • Continent: ASIA
  • Gadm:
    • Level0:
      • Gid: CHN
      • Name: China
    • Level1:
      • Gid: CHN.11_1
      • Name: Heilongjiang
    • Level2:
      • Gid: CHN.11.4_1
      • Name: Hegang
    • Level3:
      • Gid: CHN.11.4.3_1
      • Name: Luobei
  • TypeStatus: Type
  • Issues:
    • 0: GEODETIC_DATUM_ASSUMED_WGS84
    • 1: CONTINENT_DERIVED_FROM_COORDINATES
    • 2: COLLECTION_MATCH_NONE
    • 3: INSTITUTION_MATCH_FUZZY
  • LastInterpreted: 2025-02-09T17:43:15.017+00:00
  • License: http://creativecommons.org/licenses/by/4.0/legalcode
  • IsSequenced: False
  • Identifiers:
    • 0:
      • Identifier: 1831403206
  • Media:
  • Facts:
  • Relations:
  • InstitutionKey: 883f3d24-35e9-462d-b7a3-13c2b9b7260e
  • IsInCluster: False
  • DnaSequenceID:
  • GeodeticDatum: WGS84
  • Class: Actinomycetia
  • CountryCode: CN
  • RecordedByIDs:
  • IdentifiedByIDs:
  • GbifRegion: ASIA
  • Country: China
  • PublishedByGbifRegion: EUROPE
  • CatalogNumber: DSM 46712
  • InstitutionCode: DSMZ
  • Locality: Heilongjiang Province, Luobei (48°8' N, 130°40'E)
  • GbifID: 1831403206
  • CollectionCode: Prokarya

  • Lineage: cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Micromonosporales; Micromonosporaceae; Dactylosporangium
  • LineageEx:
    • Taxon:
      • 0:
        • TaxId: 131567
        • ScientificName: cellular organisms
        • Rank: cellular root
      • 1:
        • TaxId: 2
        • ScientificName: Bacteria
        • Rank: domain
      • 2:
        • TaxId: 1783272
        • ScientificName: Bacillati
        • Rank: kingdom
      • 3:
        • TaxId: 201174
        • ScientificName: Actinomycetota
        • Rank: phylum
      • 4:
        • TaxId: 1760
        • ScientificName: Actinomycetes
        • Rank: class
      • 5:
        • TaxId: 85008
        • ScientificName: Micromonosporales
        • Rank: order
      • 6:
        • TaxId: 28056
        • ScientificName: Micromonosporaceae
        • Rank: family
      • 7:
        • TaxId: 35753
        • ScientificName: Dactylosporangium
        • Rank: genus