General Information

Title Xanthomonas campestris InaCC B1454
Organism Xanthomonas campestris
Sample Type Microbe
Description
External Links
Description URL
None

Sample Information

Sample Attribute
Sample Name InaCC B1454
Sample Title Xanthomonas campestris InaCC B1454
Description
Taxonomy ID 339
Bioproject Id
Locus Tag Prefix
Strain InaCC B1454
Isolate N/A
Isolation Source N/A
Host N/A
Lab Host
Biomaterial Provider
Sample Type cell culture
Collection Date N/A
Geographic Location Name N/A
Latitude Longitude
Environmental Biome
Depth
Altitude
Collected By
Culture Collection
Genotype
Host Tissue Sampled
Identified By
Mating Type
Passage History
Sample Size
Serotype
Serovar
Specimen Voucher
Temperature
Organism 261
Center PUSAT RISET KOMPUTASI
Lab Pusat Sekuensing
Submitter Inna Syafarina
Submitted at 16-11-2023
Published at 16-11-2023

Other Information

  • Key: 4901324279
  • DatasetKey: 50c9509d-22c7-4a22-a47d-8c48425ef4a7
  • PublishingOrgKey: 28eb1a3f-1c15-4a95-931a-4af90ecb574d
  • InstallationKey: 997448a8-f762-11e1-a439-00145eb45e9a
  • HostingOrganizationKey: 28eb1a3f-1c15-4a95-931a-4af90ecb574d
  • PublishingCountry: US
  • Protocol: DWC_ARCHIVE
  • LastCrawled: 2024-10-18T20:49:13.203+00:00
  • LastParsed: 2024-10-19T13:24:16.835+00:00
  • CrawlId: 492
  • Extensions:
    • Http://rs.gbif.org/terms/1.0/Multimedia:
      • 0:
        • Http://purl.org/dc/terms/references: https://www.inaturalist.org/photos/361274323
        • Http://purl.org/dc/terms/creator: pheleka_nfs
        • Http://purl.org/dc/terms/created: 2024-03-29T13:34:09Z
        • Http://rs.tdwg.org/dwc/terms/catalogNumber: 361274323
        • Http://purl.org/dc/terms/rightsHolder: pheleka_nfs
        • Http://purl.org/dc/terms/publisher: iNaturalist
        • Http://purl.org/dc/terms/license: http://creativecommons.org/licenses/by-nc/4.0/
        • Http://purl.org/dc/terms/format: image/jpeg
        • Http://purl.org/dc/terms/identifier: https://inaturalist-open-data.s3.amazonaws.com/photos/361274323/original.jpg
        • Http://purl.org/dc/terms/type: StillImage
  • BasisOfRecord: HUMAN_OBSERVATION
  • OccurrenceStatus: PRESENT
  • TaxonKey: 9156233
  • KingdomKey: 3
  • PhylumKey: 111
  • ClassKey: 362
  • OrderKey: 820
  • FamilyKey: 5611
  • GenusKey: 3220012
  • SpeciesKey: 9156233
  • AcceptedTaxonKey: 9156233
  • ScientificName: Xanthomonas campestris_B
  • AcceptedScientificName: Xanthomonas campestris_B
  • Kingdom: Bacteria
  • Phylum: Proteobacteria
  • Order: Xanthomonadales
  • Family: Xanthomonadaceae
  • Genus: Xanthomonas
  • Species: Xanthomonas campestris
  • GenericName: Xanthomonas
  • SpecificEpithet: campestris
  • TaxonRank: SPECIES
  • TaxonomicStatus: ACCEPTED
  • DateIdentified: 2024-03-29T13:46:44
  • DecimalLatitude: -30.20372
  • DecimalLongitude: 30.087932
  • CoordinateUncertaintyInMeters: 4.0
  • Continent: AFRICA
  • StateProvince: KwaZulu-Natal
  • Gadm:
    • Level0:
      • Gid: ZAF
      • Name: South Africa
    • Level1:
      • Gid: ZAF.4_1
      • Name: KwaZulu-Natal
    • Level2:
      • Gid: ZAF.4.4_1
      • Name: Sisonke
    • Level3:
      • Gid: ZAF.4.4.4_1
      • Name: Ubuhlebezwe
  • Year: 2024
  • Month: 3
  • Day: 29
  • EventDate: 2024-03-29T15:34:09
  • StartDayOfYear: 89
  • EndDayOfYear: 89
  • Issues:
    • 0: COORDINATE_ROUNDED
    • 1: CONTINENT_DERIVED_FROM_COORDINATES
    • 2: TAXON_MATCH_TAXON_ID_IGNORED
  • Modified: 2024-06-26T08:40:27.000+00:00
  • LastInterpreted: 2024-10-19T13:24:16.835+00:00
  • References: https://www.inaturalist.org/observations/204393335
  • License: http://creativecommons.org/licenses/by-nc/4.0/legalcode
  • IsSequenced: False
  • Identifiers:
    • 0:
      • Identifier: 204393335
  • Media:
    • 0:
      • Type: StillImage
      • Format: image/jpeg
      • References: https://www.inaturalist.org/photos/361274323
      • Created: 2024-03-29T13:34:09.000+00:00
      • Creator: pheleka_nfs
      • Publisher: iNaturalist
      • License: http://creativecommons.org/licenses/by-nc/4.0/
      • RightsHolder: pheleka_nfs
      • Identifier: https://inaturalist-open-data.s3.amazonaws.com/photos/361274323/original.jpg
  • Facts:
  • Relations:
  • IsInCluster: False
  • DatasetName: iNaturalist research-grade observations
  • RecordedBy: pheleka_nfs
  • IdentifiedBy: pheleka_nfs
  • GeodeticDatum: WGS84
  • Class: Gammaproteobacteria
  • CountryCode: ZA
  • RecordedByIDs:
  • IdentifiedByIDs:
  • Country: South Africa
  • GbifRegion: AFRICA
  • PublishedByGbifRegion: NORTH_AMERICA
  • RightsHolder: pheleka_nfs
  • Identifier: 204393335
  • Http://unknown.org/nick: pheleka_nfs
  • VerbatimEventDate: 2024-03-29 15:34:09+02:00
  • VerbatimLocality: Ubuhlebezwe, Ixopo, KZN, ZA
  • CollectionCode: Observations
  • GbifID: 4901324279
  • OccurrenceID: https://www.inaturalist.org/observations/204393335
  • TaxonID: 384743
  • CatalogNumber: 204393335
  • InstitutionCode: iNaturalist
  • EventTime: 15:34:09+02:00
  • Http://unknown.org/captive: wild
  • IdentificationID: 464522983

  • Cell morphology:
    • @ref: 117116
    • Gram stain: negative
    • Cell shape: oval-shaped
    • Motility: no
  • Pigmentation:
    • @ref: 117116
    • Production: no
    • Name: Pyocyanin

  • Culture medium:
    • 0:
      • @ref: 1411
      • Name: NUTRIENT AGAR (DSMZ Medium 1)
      • Growth: yes
      • Link: https://mediadive.dsmz.de/medium/1
      • Composition: Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
    • 1:
      • @ref: 1411
      • Name: R2A MEDIUM (DSMZ Medium 830)
      • Growth: yes
      • Link: https://mediadive.dsmz.de/medium/830
      • Composition: Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
    • 2:
      • @ref: 38386
      • Name: MEDIUM 3 - Columbia agar
      • Growth: yes
      • Composition: Columbia agar (39.000 g);distilled water (1000.000 ml)
    • 3:
      • @ref: 117116
      • Name: CIP Medium 3
      • Growth: yes
      • Link: https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3
    • 4:
      • @ref: 117116
      • Name: CIP Medium 72
      • Growth: yes
      • Link: https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72
  • Culture temp:
    • 0:
      • @ref: 1411
      • Growth: positive
      • Type: growth
      • Temperature: 28
    • 1:
      • @ref: 38386
      • Growth: positive
      • Type: growth
      • Temperature: 25
    • 2:
      • @ref: 57820
      • Growth: positive
      • Type: growth
      • Temperature: 28
    • 3:
      • @ref: 67770
      • Growth: positive
      • Type: growth
      • Temperature: 28
    • 4:
      • @ref: 117116
      • Growth: positive
      • Type: growth
      • Temperature: 10-37
    • 5:
      • @ref: 117116
      • Growth: no
      • Type: growth
      • Temperature: 41

  • Oxygen tolerance:
    • 0:
      • @ref: 57820
      • Oxygen tolerance: aerobe
    • 1:
      • @ref: 117116
      • Oxygen tolerance: obligate aerobe
  • Halophily:
    • 0:
      • @ref: 117116
      • Salt: NaCl
      • Growth: positive
      • Tested relation: growth
      • Concentration: 0-2 %
    • 1:
      • @ref: 117116
      • Salt: NaCl
      • Growth: no
      • Tested relation: growth
      • Concentration: 4 %
    • 2:
      • @ref: 117116
      • Salt: NaCl
      • Growth: no
      • Tested relation: growth
      • Concentration: 6 %
    • 3:
      • @ref: 117116
      • Salt: NaCl
      • Growth: no
      • Tested relation: growth
      • Concentration: 8 %
    • 4:
      • @ref: 117116
      • Salt: NaCl
      • Growth: no
      • Tested relation: growth
      • Concentration: 10 %
  • Metabolite utilization:
    • 0:
      • @ref: 22958
      • Chebi-ID: 16763
      • Metabolite: 2-oxobutanoate
      • Utilization activity: +
      • Kind of utilization tested: respiration
    • 1:
      • @ref: 22958
      • Chebi-ID: 22599
      • Metabolite: arabinose
      • Utilization activity: -
      • Kind of utilization tested: builds acid from
    • 2:
      • @ref: 22958
      • Chebi-ID: 17057
      • Metabolite: cellobiose
      • Utilization activity: +
      • Kind of utilization tested: builds acid from
    • 3:
      • @ref: 22958
      • Chebi-ID: 30612
      • Metabolite: D-glucarate
      • Utilization activity: +
      • Kind of utilization tested: respiration
    • 4:
      • @ref: 22958
      • Chebi-ID: 16634
      • Metabolite: raffinose
      • Utilization activity: +
      • Kind of utilization tested: respiration
    • 5:
      • @ref: 22958
      • Chebi-ID: 15740
      • Metabolite: formate
      • Utilization activity: -
      • Kind of utilization tested: respiration
    • 6:
      • @ref: 22958
      • Chebi-ID: 5291
      • Metabolite: gelatin
      • Utilization activity: -
      • Kind of utilization tested: hydrolysis
    • 7:
      • @ref: 22958
      • Chebi-ID: 17234
      • Metabolite: glucose
      • Utilization activity: +
      • Kind of utilization tested: builds acid from
    • 8:
      • @ref: 22958
      • Chebi-ID: 15978
      • Metabolite: glycerol 3-phosphate
      • Utilization activity: +
      • Kind of utilization tested: respiration
    • 9:
      • @ref: 22958
      • Chebi-ID: 17196
      • Metabolite: L-asparagine
      • Utilization activity: -
      • Kind of utilization tested: respiration
    • 10:
      • @ref: 22958
      • Chebi-ID: 29991
      • Metabolite: L-aspartate
      • Utilization activity: -
      • Kind of utilization tested: respiration
    • 11:
      • @ref: 22958
      • Chebi-ID: 15729
      • Metabolite: L-ornithine
      • Utilization activity: -
      • Kind of utilization tested: respiration
    • 12:
      • @ref: 22958
      • Chebi-ID: 16857
      • Metabolite: L-threonine
      • Utilization activity: +
      • Kind of utilization tested: respiration
    • 13:
      • @ref: 22958
      • Chebi-ID: 29864
      • Metabolite: mannitol
      • Utilization activity: +
      • Kind of utilization tested: builds acid from
    • 14:
      • @ref: 22958
      • Chebi-ID: 17272
      • Metabolite: propionate
      • Utilization activity: +
      • Kind of utilization tested: respiration
    • 15:
      • @ref: 22958
      • Chebi-ID: 30911
      • Metabolite: sorbitol
      • Utilization activity: -
      • Kind of utilization tested: builds acid from
    • 16:
      • @ref: 22958
      • Chebi-ID: 28017
      • Metabolite: starch
      • Utilization activity: +
      • Kind of utilization tested: hydrolysis
    • 17:
      • @ref: 22958
      • Chebi-ID: 16704
      • Metabolite: uridine
      • Utilization activity: -
      • Kind of utilization tested: respiration
    • 18:
      • @ref: 22958
      • Chebi-ID: 27248
      • Metabolite: urocanic acid
      • Utilization activity: +
      • Kind of utilization tested: respiration
    • 19:
      • @ref: 68369
      • Chebi-ID: 25115
      • Metabolite: malate
      • Utilization activity: +
      • Kind of utilization tested: assimilation
    • 20:
      • @ref: 68369
      • Chebi-ID: 17128
      • Metabolite: adipate
      • Utilization activity: -
      • Kind of utilization tested: assimilation
    • 21:
      • @ref: 68369
      • Chebi-ID: 27689
      • Metabolite: decanoate
      • Utilization activity: -
      • Kind of utilization tested: assimilation
    • 22:
      • @ref: 68369
      • Chebi-ID: 24265
      • Metabolite: gluconate
      • Utilization activity: -
      • Kind of utilization tested: assimilation
    • 23:
      • @ref: 68369
      • Chebi-ID: 17306
      • Metabolite: maltose
      • Utilization activity: -
      • Kind of utilization tested: assimilation
    • 24:
      • @ref: 68369
      • Chebi-ID: 59640
      • Metabolite: N-acetylglucosamine
      • Utilization activity: +
      • Kind of utilization tested: assimilation
    • 25:
      • @ref: 68369
      • Chebi-ID: 16899
      • Metabolite: D-mannitol
      • Utilization activity: -
      • Kind of utilization tested: assimilation
    • 26:
      • @ref: 68369
      • Chebi-ID: 16024
      • Metabolite: D-mannose
      • Utilization activity: +
      • Kind of utilization tested: assimilation
    • 27:
      • @ref: 68369
      • Chebi-ID: 30849
      • Metabolite: L-arabinose
      • Utilization activity: -
      • Kind of utilization tested: assimilation
    • 28:
      • @ref: 68369
      • Chebi-ID: 17634
      • Metabolite: D-glucose
      • Utilization activity: +
      • Kind of utilization tested: assimilation
    • 29:
      • @ref: 68369
      • Chebi-ID: 5291
      • Metabolite: gelatin
      • Utilization activity: +
      • Kind of utilization tested: hydrolysis
    • 30:
      • @ref: 68369
      • Chebi-ID: 4853
      • Metabolite: esculin
      • Utilization activity: +
      • Kind of utilization tested: hydrolysis
    • 31:
      • @ref: 68369
      • Chebi-ID: 16199
      • Metabolite: urea
      • Utilization activity: -
      • Kind of utilization tested: hydrolysis
    • 32:
      • @ref: 68369
      • Chebi-ID: 29016
      • Metabolite: arginine
      • Utilization activity: -
      • Kind of utilization tested: hydrolysis
    • 33:
      • @ref: 68369
      • Chebi-ID: 17634
      • Metabolite: D-glucose
      • Utilization activity: -
      • Kind of utilization tested: fermentation
    • 34:
      • @ref: 68369
      • Chebi-ID: 27897
      • Metabolite: tryptophan
      • Utilization activity: -
      • Kind of utilization tested: energy source
    • 35:
      • @ref: 68369
      • Chebi-ID: 17632
      • Metabolite: nitrate
      • Utilization activity: -
      • Kind of utilization tested: reduction
    • 36:
      • @ref: 117116
      • Chebi-ID: 16947
      • Metabolite: citrate
      • Utilization activity: +
      • Kind of utilization tested: carbon source
    • 37:
      • @ref: 117116
      • Chebi-ID: 4853
      • Metabolite: esculin
      • Utilization activity: +
      • Kind of utilization tested: hydrolysis
    • 38:
      • @ref: 117116
      • Chebi-ID: 17632
      • Metabolite: nitrate
      • Utilization activity: -
      • Kind of utilization tested: reduction
    • 39:
      • @ref: 117116
      • Chebi-ID: 16301
      • Metabolite: nitrite
      • Utilization activity: -
      • Kind of utilization tested: reduction
    • 40:
      • @ref: 117116
      • Chebi-ID: 17632
      • Metabolite: nitrate
      • Utilization activity: -
      • Kind of utilization tested: respiration
  • Metabolite production:
    • 0:
      • @ref: 68369
      • Chebi-ID: 35581
      • Metabolite: indole
      • Production: no
    • 1:
      • @ref: 117116
      • Chebi-ID: 35581
      • Metabolite: indole
      • Production: no
  • Metabolite tests:
    • @ref: 68369
    • Chebi-ID: 35581
    • Metabolite: indole
    • Indole test: -
  • Enzymes:
    • 0:
      • @ref: 22958
      • Value: gelatinase
      • Activity: -
    • 1:
      • @ref: 68369
      • Value: cytochrome oxidase
      • Activity: -
      • Ec: 1.9.3.1
    • 2:
      • @ref: 68369
      • Value: gelatinase
      • Activity: +
    • 3:
      • @ref: 68369
      • Value: beta-glucosidase
      • Activity: +
      • Ec: 3.2.1.21
    • 4:
      • @ref: 68369
      • Value: urease
      • Activity: -
      • Ec: 3.5.1.5
    • 5:
      • @ref: 68369
      • Value: arginine dihydrolase
      • Activity: -
      • Ec: 3.5.3.6
    • 6:
      • @ref: 117116
      • Value: oxidase
      • Activity: +
    • 7:
      • @ref: 117116
      • Value: beta-galactosidase
      • Activity: +
      • Ec: 3.2.1.23
    • 8:
      • @ref: 117116
      • Value: alcohol dehydrogenase
      • Activity: -
      • Ec: 1.1.1.1
    • 9:
      • @ref: 117116
      • Value: gelatinase
      • Activity: +/-
    • 10:
      • @ref: 117116
      • Value: amylase
      • Activity: +
    • 11:
      • @ref: 117116
      • Value: DNase
      • Activity: +
    • 12:
      • @ref: 117116
      • Value: caseinase
      • Activity: +
      • Ec: 3.4.21.50
    • 13:
      • @ref: 117116
      • Value: catalase
      • Activity: +
      • Ec: 1.11.1.6
    • 14:
      • @ref: 117116
      • Value: tween esterase
      • Activity: +
    • 15:
      • @ref: 117116
      • Value: lecithinase
      • Activity: +
    • 16:
      • @ref: 117116
      • Value: lipase
      • Activity: +
    • 17:
      • @ref: 117116
      • Value: lysine decarboxylase
      • Activity: -
      • Ec: 4.1.1.18
    • 18:
      • @ref: 117116
      • Value: ornithine decarboxylase
      • Activity: -
      • Ec: 4.1.1.17
    • 19:
      • @ref: 117116
      • Value: tryptophan deaminase
      • Activity: -
    • 20:
      • @ref: 117116
      • Value: urease
      • Activity: -
      • Ec: 3.5.1.5
    • 21:
      • @ref: 68382
      • Value: alkaline phosphatase
      • Activity: +
      • Ec: 3.1.3.1
    • 22:
      • @ref: 68382
      • Value: esterase (C 4)
      • Activity: -
    • 23:
      • @ref: 68382
      • Value: lipase (C 14)
      • Activity: -
    • 24:
      • @ref: 68382
      • Value: leucine arylamidase
      • Activity: +
      • Ec: 3.4.11.1
    • 25:
      • @ref: 68382
      • Value: cystine arylamidase
      • Activity: -
      • Ec: 3.4.11.3
    • 26:
      • @ref: 68382
      • Value: acid phosphatase
      • Activity: +
      • Ec: 3.1.3.2
    • 27:
      • @ref: 68382
      • Value: naphthol-AS-BI-phosphohydrolase
      • Activity: +
    • 28:
      • @ref: 68382
      • Value: beta-glucuronidase
      • Activity: -
      • Ec: 3.2.1.31
    • 29:
      • @ref: 68382
      • Value: alpha-glucosidase
      • Activity: -
      • Ec: 3.2.1.20
    • 30:
      • @ref: 68382
      • Value: alpha-mannosidase
      • Activity: -
      • Ec: 3.2.1.24
    • 31:
      • @ref: 68382
      • Value: alpha-fucosidase
      • Activity: -
      • Ec: 3.2.1.51
  • Fatty acid profile:
    • Fatty acids:
      • 0:
        • @ref: 57820
        • Fatty acid: C10:0
        • Percentage: 0.5
        • ECL: 10
      • 1:
        • @ref: 57820
        • Fatty acid: C14:0
        • Percentage: 0.7
        • ECL: 14
      • 2:
        • @ref: 57820
        • Fatty acid: C15:0
        • Percentage: 1.5
        • ECL: 15
      • 3:
        • @ref: 57820
        • Fatty acid: C16:0
        • Percentage: 2.4
        • ECL: 16
      • 4:
        • @ref: 57820
        • Fatty acid: C17:0
        • Percentage: 0.3
        • ECL: 17
      • 5:
        • @ref: 57820
        • Fatty acid: C11:0 3OH
        • Percentage: 0.3
        • ECL: 12.441
      • 6:
        • @ref: 57820
        • Fatty acid: C11:0 ANTEISO
        • Percentage: 0.2
        • ECL: 10.693
      • 7:
        • @ref: 57820
        • Fatty acid: C11:0 iso
        • Percentage: 4.2
        • ECL: 10.605
      • 8:
        • @ref: 57820
        • Fatty acid: C11:0 ISO 3OH
        • Percentage: 2.1
        • ECL: 12.09
      • 9:
        • @ref: 57820
        • Fatty acid: C12:0 3OH
        • Percentage: 1.3
        • ECL: 13.455
      • 10:
        • @ref: 57820
        • Fatty acid: C13:0 2OH
        • Percentage: 0.3
        • ECL: 14.191
      • 11:
        • @ref: 57820
        • Fatty acid: C13:0 ISO 3OH
        • Percentage: 3.3
        • ECL: 14.11
      • 12:
        • @ref: 57820
        • Fatty acid: C14:0 ISO
        • Percentage: 0.4
        • ECL: 13.618
      • 13:
        • @ref: 57820
        • Fatty acid: C15:0 ANTEISO
        • Percentage: 14.7
        • ECL: 14.711
      • 14:
        • @ref: 57820
        • Fatty acid: C15:0 ISO
        • Percentage: 31
        • ECL: 14.621
      • 15:
        • @ref: 57820
        • Fatty acid: C15:1 ISO F
        • Percentage: 0.9
        • ECL: 14.414
      • 16:
        • @ref: 57820
        • Fatty acid: C15:1 ω6c
        • Percentage: 0.7
        • ECL: 14.856
      • 17:
        • @ref: 57820
        • Fatty acid: C16:0 iso
        • Percentage: 1.6
        • ECL: 15.626
      • 18:
        • @ref: 57820
        • Fatty acid: C16:1 ω7c
        • Percentage: 9.5
        • ECL: 15.819
      • 19:
        • @ref: 57820
        • Fatty acid: C16:1 ω9c
        • Percentage: 1.2
        • ECL: 15.774
      • 20:
        • @ref: 57820
        • Fatty acid: C17:0 anteiso
        • Percentage: 0.8
        • ECL: 16.722
      • 21:
        • @ref: 57820
        • Fatty acid: C17:0 iso
        • Percentage: 6.5
        • ECL: 16.629
      • 22:
        • @ref: 57820
        • Fatty acid: C17:0 iso 3OH
        • Percentage: 0.3
        • ECL: 18.161
      • 23:
        • @ref: 57820
        • Fatty acid: C17:1 ISO I/C16:0 DMA
        • Percentage: 0.4
        • ECL: 16.481
      • 24:
        • @ref: 57820
        • Fatty acid: C17:1 ω6c
        • Percentage: 0.4
        • ECL: 16.862
      • 25:
        • @ref: 57820
        • Fatty acid: C17:1 ω8c
        • Percentage: 1.5
        • ECL: 16.792
      • 26:
        • @ref: 57820
        • Fatty acid: C17:1 ω9c ISO
        • Percentage: 10.9
        • ECL: 16.416
      • 27:
        • @ref: 57820
        • Fatty acid: C18:1 ω9c
        • Percentage: 0.6
        • ECL: 17.769
      • 28:
        • @ref: 57820
        • Fatty acid: C18:2 ω6,9c/C18:0 ANTE
        • Percentage: 0.8
        • ECL: 17.724
      • 29:
        • @ref: 57820
        • Fatty acid: Unidentified
        • Percentage: 0.2
        • ECL: 12.58
      • 30:
        • @ref: 57820
        • Fatty acid: unknown 11.798
        • Percentage: 1
        • ECL: 11.798
    • Type of FA analysis: whole cell analysis
    • Method/protocol: CCUG
  • API zym:
    • 0:
      • @ref: 57820
      • Control: -
      • Alkaline phosphatase: +
      • Esterase: -
      • Esterase Lipase: +
      • Lipase: -
      • Leucine arylamidase: +
      • Valine arylamidase: +
      • Cystine arylamidase: -
      • Trypsin: +
      • Alpha- Chymotrypsin: +
      • Acid phosphatase: +
      • Naphthol-AS-BI-phosphohydrolase: +
      • Alpha- Galactosidase: +
      • Beta- Galactosidase: +
      • Beta- Glucuronidase: -
      • Alpha- Glucosidase: -
      • Beta- Glucosidase: +
      • N-acetyl-beta- glucosaminidase: +
      • Alpha- Mannosidase: -
      • Alpha- Fucosidase: -
    • 1:
      • @ref: 117116
      • Control: -
      • Alkaline phosphatase: +
      • Esterase: -
      • Esterase Lipase: -
      • Lipase: -
      • Leucine arylamidase: +
      • Valine arylamidase: -
      • Cystine arylamidase: -
      • Trypsin: -
      • Alpha- Chymotrypsin: -
      • Acid phosphatase: +
      • Naphthol-AS-BI-phosphohydrolase: +
      • Alpha- Galactosidase: -
      • Beta- Galactosidase: -
      • Beta- Glucuronidase: -
      • Alpha- Glucosidase: -
      • Beta- Glucosidase: -
      • N-acetyl-beta- glucosaminidase: -
      • Alpha- Mannosidase: -
      • Alpha- Fucosidase: -
  • API 20NE:
    • @ref: 57820
    • NO3: -
    • TRP: -
    • GLU Ferm: -
    • ADH Arg: -
    • URE: -
    • ESC: +
    • GEL: +
    • PNPG: +
    • GLU Assim: +
    • ARA: -
    • MNE: +
    • MAN: -
    • NAG: +
    • MAL: -
    • GNT: -
    • CAP: -
    • ADI: -
    • MLT: +
    • CIT: +
    • PAC: -
    • OX: -
  • API biotype100:
    • @ref: 117116
    • GLU: +
    • FRU: +
    • GAL: +
    • TRE: +
    • MNE: +
    • SBE: -
    • MEL: +
    • SAC: +
    • RAF: -
    • MTE: +
    • MAL: +
    • LAC: -
    • LTE: -
    • MbGa: -
    • MaGa: -
    • CEL: +
    • GEN: -
    • MbGu: -
    • ESC: +
    • RIB: -
    • ARA: +
    • XYL: +
    • PLE: -
    • RHA: -
    • FUC: +
    • MLZ: -
    • DARL: -
    • LARL: -
    • XLT: -
    • DUL: -
    • TAG: -
    • GLY: +
    • INO: -
    • MAN: -
    • MTL: -
    • TUR: -
    • SOR: -
    • ADO: -
    • HBG: -
    • LYX: +
    • ERY: -
    • MDG: -
    • 3MDG: -
    • SAT: +
    • MUC: +
    • LTAT: -
    • DTAT: -
    • MTAT: -
    • DMLT: -
    • LMLT: +
    • CATE: -
    • TATE: +
    • TTE: -
    • CIT: +
    • GRT: -
    • GAT: -
    • 2KG: -
    • 5KG: -
    • TRY: -
    • NAG: +
    • GNT: -
    • PAC: -
    • PAT: +
    • POBE: -
    • QAT: -
    • GTE: -
    • MOBE: -
    • BAT: -
    • PPAT: -
    • CMT: -
    • TGE: -
    • BET: -
    • PCE: -
    • ABT: -
    • HIN: -
    • LAT: +
    • CAP: -
    • CYT: -
    • HIS: -
    • SUC: +
    • FUM: +
    • GRE: -
    • GYT: -
    • AVT: -
    • ETN: -
    • TTN: -
    • GLN: -
    • ITA: -
    • 3OBU: -
    • APT: -
    • GTT: +
    • PRO: -
    • DALA: -
    • LALA: +
    • SER: +
    • MNT: +
    • PROP: +
    • TYR: -
    • 2KT: -

  • Isolation:
    • 0:
      • @ref: 1411
      • Sample type: <I>Brassica oleracea</I> var. <I>gemmifera</I>
      • Host species: Brassica oleracea var. gemmifera
      • Country: United Kingdom
      • Origin.country: GBR
      • Continent: Europe
    • 1:
      • @ref: 57820
      • Sample type: Brassica oleracea (Gemmifera Group),stem
      • Sampling date: 1957
      • Country: United Kingdom
      • Origin.country: GBR
      • Continent: Europe
    • 2:
      • @ref: 67770
      • Sample type: <I>Brassica oleracea</I> var. <I>gemmifera</I>
      • Host species: Brassica oleracea var. gemmifera
      • Country: United Kingdom
      • Origin.country: GBR
      • Continent: Europe
    • 3:
      • @ref: 117116
      • Sample type: Food, Brassica oleracea var. gemmifera
      • Country: United Kingdom
      • Origin.country: GBR
      • Continent: Europe
  • Isolation source categories:
    • Cat1: #Host
    • Cat2: #Plants
    • Cat3: #Herbaceous plants (Grass,Crops)
  • Taxonmaps:
    • @ref: 69479
    • File name: preview.99_92.png
    • Url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_17;96_73;97_76;98_83;99_92&stattab=map
    • Last taxonomy: Xanthomonas
    • 16S sequence: X95917
    • Sequence Identity: None
    • Total samples: 52152
    • Soil counts: 10026
    • Aquatic counts: 6826
    • Animal counts: 28252
    • Plant counts: 7048

  • Risk assessment:
    • 0:
      • @ref: 1411
      • Pathogenicity plant: yes
      • Biosafety level: 1
      • Biosafety level comment: Risk group (German classification)
    • 1:
      • @ref: 117116
      • Biosafety level: 1
      • Biosafety level comment: Risk group (French classification)

  • 16S sequences:
    • 0:
      • @ref: 20218
      • Description: Xanthomonas campestris pv. campestris clone K0032 16S-23S ribosomal RNA intergenic spacer and 23S ribosomal RNA gene, partial sequence
      • Accession: HM181724
      • Length: 557
      • Database: nuccore
      • NCBI tax ID: 340
    • 1:
      • @ref: 67770
      • Description: X.campestris 16S rRNA gene
      • Accession: X95917
      • Length: 1502
      • Database: nuccore
      • NCBI tax ID: 339
    • 2:
      • @ref: 124043
      • Description: Xanthomonas campestris strain LMG568 16S-23S ribosomal RNA intergenic spacer, complete sequence.
      • Accession: AF209755
      • Length: 509
      • Database: nuccore
      • NCBI tax ID: 339
  • Genome sequences:
    • 0:
      • @ref: 66792
      • Description: Xanthomonas campestris pv. campestris str. ATCC 33913
      • Accession: GCA_000007145
      • Assembly level: complete
      • Database: ncbi
      • NCBI tax ID: 190485
    • 1:
      • @ref: 66792
      • Description: Xanthomonas campestris pv. campestris NCPPB 528
      • Accession: GCA_020813135
      • Assembly level: contig
      • Database: ncbi
      • NCBI tax ID: 340
    • 2:
      • @ref: 66792
      • Description: Xanthomonas campestris pv. campestris str. ATCC 33913
      • Accession: 190485.4
      • Assembly level: complete
      • Database: patric
      • NCBI tax ID: 190485
    • 3:
      • @ref: 66792
      • Description: Xanthomonas campestris pv. Campestris ATCC 33913
      • Accession: 637000344
      • Assembly level: complete
      • Database: img
      • NCBI tax ID: 190485

  • Lineage: cellular organisms; Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales; Lysobacteraceae; Xanthomonas
  • LineageEx:
    • Taxon:
      • 0:
        • TaxId: 131567
        • ScientificName: cellular organisms
        • Rank: no rank
      • 1:
        • TaxId: 2
        • ScientificName: Bacteria
        • Rank: superkingdom
      • 2:
        • TaxId: 1224
        • ScientificName: Pseudomonadota
        • Rank: phylum
      • 3:
        • TaxId: 1236
        • ScientificName: Gammaproteobacteria
        • Rank: class
      • 4:
        • TaxId: 135614
        • ScientificName: Lysobacterales
        • Rank: order
      • 5:
        • TaxId: 32033
        • ScientificName: Lysobacteraceae
        • Rank: family
      • 6:
        • TaxId: 338
        • ScientificName: Xanthomonas
        • Rank: genus