General Information

Title Streptomyces sampsonii BLH 3-16
Organism Streptomyces sampsonii
Sample Type Microbe
Description
External Links
Description URL
None

Sample Information

Sample Attribute
Sample Name InaCC A1193
Sample Title Streptomyces sampsonii BLH 3-16
Description
Taxonomy ID 42239
Bioproject Id
Locus Tag Prefix
Strain BLH 3-16
Isolate N/A
Isolation Source N/A
Host N/A
Lab Host
Biomaterial Provider
Sample Type cell culture
Collection Date N/A
Geographic Location Name N/A
Latitude Longitude
Environmental Biome
Depth
Altitude
Collected By
Culture Collection
Genotype
Host Tissue Sampled
Identified By
Mating Type
Passage History
Sample Size
Serotype
Serovar
Specimen Voucher
Temperature
Organism 1008
Center PUSAT RISET KOMPUTASI
Lab Pusat Sekuensing
Submitter Inna Syafarina
Submitted at 26-10-2023
Published at 26-10-2023

Other Information

  • Key: 4439315542
  • DatasetKey: 7e9d3bc6-bb85-42a5-8826-fe2b27552e2c
  • PublishingOrgKey: 10edba3c-8fe0-4a8c-8767-312d0e2badb5
  • InstallationKey: f66ca88d-1f6a-49dc-b33b-32960faee57e
  • HostingOrganizationKey: fbca90e3-8aed-48b1-84e3-369afbd000ce
  • PublishingCountry: LK
  • Protocol: EML
  • LastCrawled: 2024-07-02T10:12:33.795+00:00
  • LastParsed: 2024-07-02T10:14:13.588+00:00
  • CrawlId: 35
  • Extensions:
  • BasisOfRecord: MACHINE_OBSERVATION
  • IndividualCount: 4
  • OccurrenceStatus: PRESENT
  • TaxonKey: 3223787
  • KingdomKey: 3
  • PhylumKey: 10813635
  • ClassKey: 10701801
  • OrderKey: 10857265
  • FamilyKey: 8091
  • GenusKey: 2584528
  • SpeciesKey: 3223983
  • AcceptedTaxonKey: 3223983
  • ScientificName: Streptomyces sampsonii (Millard & Burr, 1926) Waksman, 1953
  • AcceptedScientificName: Streptomyces albidoflavus (Rossi Doria, 1891) Waksman & Henrici, 1948
  • Kingdom: Bacteria
  • Phylum: Actinobacteriota
  • Order: Streptomycetales
  • Family: Streptomycetaceae
  • Genus: Streptomyces
  • Species: Streptomyces albidoflavus
  • GenericName: Streptomyces
  • SpecificEpithet: sampsonii
  • TaxonRank: SPECIES
  • TaxonomicStatus: SYNONYM
  • IucnRedListCategory: NE
  • DecimalLatitude: 7.154037
  • DecimalLongitude: 80.185443
  • Continent: ASIA
  • Gadm:
    • Level0:
      • Gid: LKA
      • Name: Sri Lanka
    • Level1:
      • Gid: LKA.12_1
      • Name: Kegalle
    • Level2:
      • Gid: LKA.12.10_1
      • Name: Warakapola
  • Year: 2022
  • Month: 2
  • Day: 8
  • EventDate: 2022-02-08
  • StartDayOfYear: 39
  • EndDayOfYear: 39
  • Issues:
  • LastInterpreted: 2024-07-02T10:14:13.588+00:00
  • License: http://creativecommons.org/publicdomain/zero/1.0/legalcode
  • OrganismQuantity: 4.0
  • OrganismQuantityType: individuals
  • IsSequenced: False
  • Identifiers:
    • 0:
      • Identifier: V4R07_134
  • Media:
  • Facts:
  • Relations:
  • IsInCluster: False
  • SamplingProtocol: eDNA sampling from soil
  • GeodeticDatum: WGS84
  • Class: Actinomycetia
  • CountryCode: LK
  • RecordedByIDs:
  • IdentifiedByIDs:
  • Country: Sri Lanka
  • GbifRegion: ASIA
  • PublishedByGbifRegion: ASIA
  • EventID: V4R07
  • Identifier: V4R07_134
  • GbifID: 4439315542
  • OccurrenceID: V4R07_134

  • Culture medium:
    • @ref: 9518
    • Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
    • Growth: yes
    • Link: https://mediadive.dsmz.de/medium/65
    • Composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
  • Culture temp:
    • 0:
      • @ref: 18588
      • Growth: positive
      • Type: optimum
      • Temperature: 30
    • 1:
      • @ref: 9518
      • Growth: positive
      • Type: growth
      • Temperature: 28
    • 2:
      • @ref: 67770
      • Growth: positive
      • Type: growth
      • Temperature: 28

  • Halophily:
    • @ref: 18588
    • Salt: NaCl
    • Growth: positive
    • Tested relation: maximum
    • Concentration: 7.5 %
  • Metabolite utilization:
    • 0:
      • @ref: 18588
      • Chebi-ID: 17234
      • Metabolite: glucose
      • Utilization activity: +
    • 1:
      • @ref: 18588
      • Chebi-ID: 22599
      • Metabolite: arabinose
      • Utilization activity: +
    • 2:
      • @ref: 18588
      • Chebi-ID: 17992
      • Metabolite: sucrose
      • Utilization activity: -
    • 3:
      • @ref: 18588
      • Chebi-ID: 18222
      • Metabolite: xylose
      • Utilization activity: -
    • 4:
      • @ref: 18588
      • Chebi-ID: 17268
      • Metabolite: myo-inositol
      • Utilization activity: -
    • 5:
      • @ref: 18588
      • Chebi-ID: 29864
      • Metabolite: mannitol
      • Utilization activity: +
    • 6:
      • @ref: 18588
      • Chebi-ID: 28757
      • Metabolite: fructose
      • Utilization activity: +
    • 7:
      • @ref: 18588
      • Chebi-ID: 26546
      • Metabolite: rhamnose
      • Utilization activity: -
    • 8:
      • @ref: 18588
      • Chebi-ID: 16634
      • Metabolite: raffinose
      • Utilization activity: -
    • 9:
      • @ref: 18588
      • Chebi-ID: 62968
      • Metabolite: cellulose
      • Utilization activity: -
    • 10:
      • @ref: 68368
      • Chebi-ID: 5291
      • Metabolite: gelatin
      • Utilization activity: -
      • Kind of utilization tested: hydrolysis
    • 11:
      • @ref: 68368
      • Chebi-ID: 27897
      • Metabolite: tryptophan
      • Utilization activity: -
      • Kind of utilization tested: energy source
    • 12:
      • @ref: 68368
      • Chebi-ID: 16199
      • Metabolite: urea
      • Utilization activity: -
      • Kind of utilization tested: hydrolysis
    • 13:
      • @ref: 68368
      • Chebi-ID: 16947
      • Metabolite: citrate
      • Utilization activity: -
      • Kind of utilization tested: assimilation
    • 14:
      • @ref: 68368
      • Chebi-ID: 18257
      • Metabolite: ornithine
      • Utilization activity: -
      • Kind of utilization tested: degradation
    • 15:
      • @ref: 68368
      • Chebi-ID: 25094
      • Metabolite: lysine
      • Utilization activity: -
      • Kind of utilization tested: degradation
    • 16:
      • @ref: 68368
      • Chebi-ID: 29016
      • Metabolite: arginine
      • Utilization activity: -
      • Kind of utilization tested: hydrolysis
  • Metabolite production:
    • 0:
      • @ref: 68368
      • Chebi-ID: 15688
      • Metabolite: acetoin
      • Production: yes
    • 1:
      • @ref: 68368
      • Chebi-ID: 35581
      • Metabolite: indole
      • Production: no
    • 2:
      • @ref: 68368
      • Chebi-ID: 16136
      • Metabolite: hydrogen sulfide
      • Production: no
  • Metabolite tests:
    • 0:
      • @ref: 68368
      • Chebi-ID: 15688
      • Metabolite: acetoin
      • Voges-proskauer-test: +
    • 1:
      • @ref: 68368
      • Chebi-ID: 35581
      • Metabolite: indole
      • Indole test: -
  • Enzymes:
    • 0:
      • @ref: 68368
      • Value: gelatinase
      • Activity: -
    • 1:
      • @ref: 68368
      • Value: tryptophan deaminase
      • Activity: -
      • Ec: 4.1.99.1
    • 2:
      • @ref: 68368
      • Value: urease
      • Activity: -
      • Ec: 3.5.1.5
    • 3:
      • @ref: 68368
      • Value: ornithine decarboxylase
      • Activity: -
      • Ec: 4.1.1.17
    • 4:
      • @ref: 68368
      • Value: lysine decarboxylase
      • Activity: -
      • Ec: 4.1.1.18
    • 5:
      • @ref: 68368
      • Value: arginine dihydrolase
      • Activity: -
      • Ec: 3.5.3.6
    • 6:
      • @ref: 68368
      • Value: beta-galactosidase
      • Activity: -
      • Ec: 3.2.1.23
  • API 20E:
    • @ref: 18588
    • ONPG: -
    • ADH Arg: -
    • LDC Lys: -
    • ODC: -
    • CIT: -
    • H2S: -
    • URE: -
    • TDA Trp: -
    • IND: -
    • VP: +
    • GEL: -

  • Isolation:
    • @ref: 9518
    • Sample type: potato scab
  • Isolation source categories:
    • 0:
      • Cat1: #Host
      • Cat2: #Plants
      • Cat3: #Herbaceous plants (Grass,Crops)
    • 1:
      • Cat1: #Host Body-Site
      • Cat2: #Other
      • Cat3: #Wound
    • 2:
      • Cat1: #Host Body-Site
      • Cat2: #Plant
      • Cat3: #Root (Rhizome)
  • Taxonmaps:
    • @ref: 69479
    • File name: preview.99_720.png
    • Url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15;96_91;97_287;98_384;99_720&stattab=map
    • Last taxonomy: Streptomyces
    • 16S sequence: Z76680
    • Sequence Identity: None
    • Total samples: 129
    • Soil counts: 39
    • Aquatic counts: 5
    • Animal counts: 85

  • Risk assessment:
    • 0:
      • @ref: 18588
      • Biosafety level: 1
      • Biosafety level comment: German classification
    • 1:
      • @ref: 9518
      • Biosafety level: 1
      • Biosafety level comment: Risk group (German classification)

  • 16S sequences:
    • 0:
      • @ref: 20218
      • Description: Streptomyces sampsonii gene for 16S rRNA, partial sequence, strain: NBRC 13083
      • Accession: AB184299
      • Length: 1465
      • Database: nuccore
      • NCBI tax ID: 42239
    • 1:
      • @ref: 20218
      • Description: Streptomyces sampsonii strain DSM40394 16S-23S intergenic spacer region, partial sequence
      • Accession: AF363494
      • Length: 308
      • Database: nuccore
      • NCBI tax ID: 42239
    • 2:
      • @ref: 20218
      • Description: Streptomyces sampsonii strain DSM 40394 clone ITS17 16S-23S ribosomal RNA intergenic spacer, partial sequence
      • Accession: AY296953
      • Length: 283
      • Database: nuccore
      • NCBI tax ID: 42239
    • 3:
      • @ref: 20218
      • Description: Streptomyces sampsonii strain DSM 40394 clone ITS1 16S-23S ribosomal RNA intergenic spacer, partial sequence
      • Accession: AY296956
      • Length: 287
      • Database: nuccore
      • NCBI tax ID: 42239
    • 4:
      • @ref: 20218
      • Description: Streptomyces sampsonii strain DSM 40394 clone ITS11 16S-23S ribosomal RNA intergenic spacer, partial sequence
      • Accession: AY296957
      • Length: 284
      • Database: nuccore
      • NCBI tax ID: 42239
    • 5:
      • @ref: 20218
      • Description: Streptomyces sampsonii strain DSM 40394 clone ITS17 16S-23S ribosomal RNA intergenic spacer, partial sequence
      • Accession: AY296958
      • Length: 283
      • Database: nuccore
      • NCBI tax ID: 42239
    • 6:
      • @ref: 20218
      • Description: Streptomyces sampsonii strain DSM 40394 clone ITS19 16S-23S ribosomal RNA intergenic spacer, partial sequence
      • Accession: AY296959
      • Length: 285
      • Database: nuccore
      • NCBI tax ID: 42239
    • 7:
      • @ref: 20218
      • Description: Streptomyces sampsonii strain DSM 40394 clone ITS4 16S-23S ribosomal RNA intergenic spacer, partial sequence
      • Accession: AY296960
      • Length: 284
      • Database: nuccore
      • NCBI tax ID: 42239
    • 8:
      • @ref: 20218
      • Description: Streptomyces sampsonii strain DSM 40394 clone ITS8 16S-23S ribosomal RNA intergenic spacer, partial sequence
      • Accession: AY296961
      • Length: 284
      • Database: nuccore
      • NCBI tax ID: 42239
    • 9:
      • @ref: 20218
      • Description: Streptomyces sampsonii gene for 16S ribosomal RNA, partial sequence, strain: JCM 4516
      • Accession: D44203
      • Length: 120
      • Database: nuccore
      • NCBI tax ID: 42239
    • 10:
      • @ref: 20218
      • Description: Streptomyces sampsonii 16S ribosomal RNA gene, partial sequence
      • Accession: EU928970
      • Length: 1385
      • Database: nuccore
      • NCBI tax ID: 42239
    • 11:
      • @ref: 20218
      • Description: S.sampsonii (DSM 40394T) 16S rRNA gene
      • Accession: Z76680
      • Length: 1476
      • Database: nuccore
      • NCBI tax ID: 42239
    • 12:
      • @ref: 9518
      • Description: Streptomyces sampsonii 16S ribosomal RNA, complete sequence
      • Accession: D63871
      • Length: 1531
      • Database: nuccore
      • NCBI tax ID: 42239
  • Genome sequences:
    • 0:
      • @ref: 66792
      • Description: Streptomyces albidoflavus strain NBRC 13083
      • Accession: 1886.39
      • Assembly level: wgs
      • Database: patric
      • NCBI tax ID: 1886
    • 1:
      • @ref: 67770
      • Description: Streptomyces albidoflavus NBRC 13083
      • Accession: GCA_004195755
      • Assembly level: contig
      • Database: ncbi
      • NCBI tax ID: 1886

  • Lineage: cellular organisms; Bacteria; Terrabacteria group; Actinomycetota; Actinomycetes; Kitasatosporales; Streptomycetaceae; Streptomyces; Streptomyces albidoflavus group
  • LineageEx:
    • Taxon:
      • 0:
        • TaxId: 131567
        • ScientificName: cellular organisms
        • Rank: no rank
      • 1:
        • TaxId: 2
        • ScientificName: Bacteria
        • Rank: superkingdom
      • 2:
        • TaxId: 1783272
        • ScientificName: Terrabacteria group
        • Rank: clade
      • 3:
        • TaxId: 201174
        • ScientificName: Actinomycetota
        • Rank: phylum
      • 4:
        • TaxId: 1760
        • ScientificName: Actinomycetes
        • Rank: class
      • 5:
        • TaxId: 85011
        • ScientificName: Kitasatosporales
        • Rank: order
      • 6:
        • TaxId: 2062
        • ScientificName: Streptomycetaceae
        • Rank: family
      • 7:
        • TaxId: 1883
        • ScientificName: Streptomyces
        • Rank: genus
      • 8:
        • TaxId: 1477431
        • ScientificName: Streptomyces albidoflavus group
        • Rank: species group