BioRepo | Biosample

Other Information

Key: 3968747526
DatasetKey: 393b8c26-e4e0-4dd0-a218-93fc074ebf4e
PublishingOrgKey: ada9d123-ddb4-467d-8891-806ea8d94230
InstallationKey: 17a83780-3060-4851-9d6f-029d5fcb81c9
HostingOrganizationKey: fbca90e3-8aed-48b1-84e3-369afbd000ce
PublishingCountry: GB
Protocol: EML
LastCrawled: 2024-10-19T12:02:47.594+00:00
LastParsed: 2024-10-19T12:23:28.068+00:00
CrawlId: 189
Extensions:
BasisOfRecord: MATERIAL_SAMPLE
OccurrenceStatus: PRESENT
TaxonKey: 3223695
KingdomKey: 3
PhylumKey: 10813635
ClassKey: 10701801
OrderKey: 10857265
FamilyKey: 8091
GenusKey: 2584528
SpeciesKey: 3223695
AcceptedTaxonKey: 3223695
ScientificName: Streptomyces rochei Berger et al., 1953
AcceptedScientificName: Streptomyces rochei Berger et al., 1953
Kingdom: Bacteria
Phylum: Actinobacteriota
Order: Streptomycetales
Family: Streptomycetaceae
Genus: Streptomyces
Species: Streptomyces rochei
GenericName: Streptomyces
SpecificEpithet: rochei
TaxonRank: SPECIES
TaxonomicStatus: ACCEPTED
IucnRedListCategory: NE
Continent: ASIA
Gadm:
Year: 2022
Month: 1
Day: 1
EventDate: 2022-01-01
StartDayOfYear: 1
EndDayOfYear: 1
Issues:
- 0: CONTINENT_DERIVED_FROM_COUNTRY
- 1: TAXON_MATCH_TAXON_CONCEPT_ID_IGNORED
- 2: TAXON_MATCH_TAXON_ID_IGNORED
LastInterpreted: 2024-10-19T12:23:28.068+00:00
References: https://www.ebi.ac.uk/ena/browser/view/ON740659
License: http://creativecommons.org/licenses/by/4.0/legalcode
IsSequenced: True
AssociatedSequences: https://www.ebi.ac.uk/ena/browser/api/embl/ON740659
Identifiers:
- 0:
  - Identifier: ON740659
Media:
Facts:
Relations:
IsInCluster: False
RecordedBy: Rahul Dev A S
Class: Actinomycetia
CountryCode: IN
RecordedByIDs:
IdentifiedByIDs:
Country: India
GbifRegion: ASIA
PublishedByGbifRegion: EUROPE
Identifier: ON740659
TaxonConceptID: https://www.ebi.ac.uk/ena/browser/view/Taxon:1928
AssociatedTaxa: tomato
OccurrenceRemarks: Streptomyces rochei strain SAT1 16S ribosomal RNA gene, partial sequence.
GbifID: 3968747526
OccurrenceID: ON740659
TaxonID: ASV:24a83633ec9cf892140ae537fd00ec6c

Multimedia:
- @ref: 9253
- Multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_40191.jpg
- Caption: Medium 987 28°C
- Intellectual property rights: © Leibniz-Institut DSMZ

Culture medium:
- 0:
  - @ref: 9253
  - Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
  - Growth: yes
  - Link: https://mediadive.dsmz.de/medium/65
  - Composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
- 1:
  - @ref: 9253
  - Name: ISP2 MEDIUM (DSMZ Medium 987)
  - Growth: yes
  - Link: https://mediadive.dsmz.de/medium/987
  - Composition: Name: ISP 2 MEDIUM (DSMZ Medium 987) Composition: Agar 20.0 g/l Malt extract 10.0 g/l Dextrose 4.0 g/l Yeast extract 4.0 g/l Distilled water
Culture temp:
- 0:
  - @ref: 18555
  - Growth: positive
  - Type: optimum
  - Temperature: 28
- 1:
  - @ref: 9253
  - Growth: positive
  - Type: growth
  - Temperature: 28
- 2:
  - @ref: 67770
  - Growth: positive
  - Type: growth
  - Temperature: 28

Compound production:
- 0:
  - @ref: 9253
  - Compound: bundlin A
- 1:
  - @ref: 9253
  - Compound: bundlin B
- 2:
  - @ref: 9253
  - Compound: moldicidin A
- 3:
  - @ref: 9253
  - Compound: pentamycin
- 4:
  - @ref: 9253
  - Compound: bundlin A, B
- 5:
  - @ref: 20216
  - Compound: Bundlin A
- 6:
  - @ref: 20216
  - Compound: Bundlin B
- 7:
  - @ref: 20216
  - Compound: Moldicin A
- 8:
  - @ref: 20216
  - Compound: Pentamycin
- 9:
  - @ref: 20216
  - Compound: Glucose isomerase
- 10:
  - @ref: 67770
  - Compound: Bundlins A and B and moldcidin B;
Metabolite utilization:
- 0:
  - @ref: 18555
  - Chebi-ID: 17234
  - Metabolite: glucose
  - Utilization activity: +
- 1:
  - @ref: 18555
  - Chebi-ID: 22599
  - Metabolite: arabinose
  - Utilization activity: +
- 2:
  - @ref: 18555
  - Chebi-ID: 17992
  - Metabolite: sucrose
  - Utilization activity: -
- 3:
  - @ref: 18555
  - Chebi-ID: 18222
  - Metabolite: xylose
  - Utilization activity: -
- 4:
  - @ref: 18555
  - Chebi-ID: 29864
  - Metabolite: mannitol
  - Utilization activity: +
- 5:
  - @ref: 18555
  - Chebi-ID: 28757
  - Metabolite: fructose
  - Utilization activity: +
- 6:
  - @ref: 18555
  - Chebi-ID: 26546
  - Metabolite: rhamnose
  - Utilization activity: -
- 7:
  - @ref: 18555
  - Chebi-ID: 16634
  - Metabolite: raffinose
  - Utilization activity: -
- 8:
  - @ref: 18555
  - Chebi-ID: 62968
  - Metabolite: cellulose
  - Utilization activity: +
- 9:
  - @ref: 18555
  - Chebi-ID: 17268
  - Metabolite: myo-inositol
  - Utilization activity: -
- 10:
  - @ref: 68368
  - Chebi-ID: 5291
  - Metabolite: gelatin
  - Utilization activity: +
  - Kind of utilization tested: hydrolysis
- 11:
  - @ref: 68368
  - Chebi-ID: 27897
  - Metabolite: tryptophan
  - Utilization activity: -
  - Kind of utilization tested: energy source
- 12:
  - @ref: 68368
  - Chebi-ID: 16199
  - Metabolite: urea
  - Utilization activity: +
  - Kind of utilization tested: hydrolysis
- 13:
  - @ref: 68368
  - Chebi-ID: 16947
  - Metabolite: citrate
  - Utilization activity: +
  - Kind of utilization tested: assimilation
- 14:
  - @ref: 68368
  - Chebi-ID: 18257
  - Metabolite: ornithine
  - Utilization activity: +
  - Kind of utilization tested: degradation
- 15:
  - @ref: 68368
  - Chebi-ID: 25094
  - Metabolite: lysine
  - Utilization activity: +
  - Kind of utilization tested: degradation
- 16:
  - @ref: 68368
  - Chebi-ID: 29016
  - Metabolite: arginine
  - Utilization activity: +
  - Kind of utilization tested: hydrolysis
Metabolite production:
- 0:
  - @ref: 67770
  - Chebi-ID: 31639
  - Metabolite: fungichromin
  - Production: yes
- 1:
  - @ref: 68368
  - Chebi-ID: 15688
  - Metabolite: acetoin
  - Production: no
- 2:
  - @ref: 68368
  - Chebi-ID: 35581
  - Metabolite: indole
  - Production: no
- 3:
  - @ref: 68368
  - Chebi-ID: 16136
  - Metabolite: hydrogen sulfide
  - Production: no
Metabolite tests:
- 0:
  - @ref: 68368
  - Chebi-ID: 15688
  - Metabolite: acetoin
  - Voges-proskauer-test: -
- 1:
  - @ref: 68368
  - Chebi-ID: 35581
  - Metabolite: indole
  - Indole test: -
Enzymes:
- 0:
  - @ref: 67770
  - Value: glucose isomerase
  - Ec: 5.3.1.18
- 1:
  - @ref: 68368
  - Value: gelatinase
  - Activity: +
- 2:
  - @ref: 68368
  - Value: tryptophan deaminase
  - Activity: -
  - Ec: 4.1.99.1
- 3:
  - @ref: 68368
  - Value: urease
  - Activity: +
  - Ec: 3.5.1.5
- 4:
  - @ref: 68368
  - Value: ornithine decarboxylase
  - Activity: +
  - Ec: 4.1.1.17
- 5:
  - @ref: 68368
  - Value: lysine decarboxylase
  - Activity: +
  - Ec: 4.1.1.18
- 6:
  - @ref: 68368
  - Value: arginine dihydrolase
  - Activity: +
  - Ec: 3.5.3.6
- 7:
  - @ref: 68368
  - Value: beta-galactosidase
  - Activity: +
  - Ec: 3.2.1.23
- 8:
  - @ref: 68382
  - Value: alkaline phosphatase
  - Activity: +
  - Ec: 3.1.3.1
- 9:
  - @ref: 68382
  - Value: esterase (C 4)
  - Activity: +
- 10:
  - @ref: 68382
  - Value: esterase lipase (C 8)
  - Activity: +
- 11:
  - @ref: 68382
  - Value: lipase (C 14)
  - Activity: -
- 12:
  - @ref: 68382
  - Value: leucine arylamidase
  - Activity: +
  - Ec: 3.4.11.1
- 13:
  - @ref: 68382
  - Value: valine arylamidase
  - Activity: +
- 14:
  - @ref: 68382
  - Value: cystine arylamidase
  - Activity: +
  - Ec: 3.4.11.3
- 15:
  - @ref: 68382
  - Value: trypsin
  - Activity: -
  - Ec: 3.4.21.4
- 16:
  - @ref: 68382
  - Value: alpha-chymotrypsin
  - Activity: -
  - Ec: 3.4.21.1
- 17:
  - @ref: 68382
  - Value: acid phosphatase
  - Activity: +
  - Ec: 3.1.3.2
- 18:
  - @ref: 68382
  - Value: naphthol-AS-BI-phosphohydrolase
  - Activity: +
- 19:
  - @ref: 68382
  - Value: alpha-galactosidase
  - Activity: -
  - Ec: 3.2.1.22
- 20:
  - @ref: 68382
  - Value: beta-galactosidase
  - Activity: +
  - Ec: 3.2.1.23
- 21:
  - @ref: 68382
  - Value: beta-glucuronidase
  - Activity: -
  - Ec: 3.2.1.31
- 22:
  - @ref: 68382
  - Value: alpha-glucosidase
  - Activity: +
  - Ec: 3.2.1.20
- 23:
  - @ref: 68382
  - Value: beta-glucosidase
  - Activity: +
  - Ec: 3.2.1.21
- 24:
  - @ref: 68382
  - Value: N-acetyl-beta-glucosaminidase
  - Activity: +
  - Ec: 3.2.1.52
- 25:
  - @ref: 68382
  - Value: alpha-mannosidase
  - Activity: +
  - Ec: 3.2.1.24
- 26:
  - @ref: 68382
  - Value: alpha-fucosidase
  - Activity: -
  - Ec: 3.2.1.51
API zym:
- @ref: 18555
- Alkaline phosphatase: +
- Esterase: +
- Esterase Lipase: +
- Lipase: -
- Leucine arylamidase: +
- Valine arylamidase: +
- Cystine arylamidase: +
- Trypsin: -
- Alpha- Chymotrypsin: -
- Acid phosphatase: +
- Naphthol-AS-BI-phosphohydrolase: +
- Alpha- Galactosidase: -
- Beta- Galactosidase: +
- Beta- Glucuronidase: -
- Alpha- Glucosidase: +
- Beta- Glucosidase: +
- N-acetyl-beta- glucosaminidase: +
- Alpha- Mannosidase: +
- Alpha- Fucosidase: -
API 20E:
- @ref: 18555
- ONPG: +
- ADH Arg: +
- LDC Lys: +
- ODC: +
- CIT: +
- H2S: -
- URE: +
- TDA Trp: -
- IND: -
- VP: -
- GEL: +

Isolation:
- 0:
  - @ref: 9253
  - Sample type: soil
  - Country: Japan
  - Origin.country: JPN
  - Continent: Asia
- 1:
  - @ref: 67770
  - Sample type: Soil
  - Geographic location: Fukushima Pref.
  - Country: Japan
  - Origin.country: JPN
  - Continent: Asia
Isolation source categories:
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
Taxonmaps:
- @ref: 69479
- File name: preview.99_3145.png
- Url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15;96_102;97_224;98_2413;99_3145&stattab=map
- Last taxonomy: Streptomyces
- 16S sequence: AY207605
- Sequence Identity: None
- Total samples: 462
- Soil counts: 384
- Aquatic counts: 10
- Animal counts: 13
- Plant counts: 55

Risk assessment:
- 0:
  - @ref: 18555
  - Biosafety level: 1
  - Biosafety level comment: German classification
- 1:
  - @ref: 9253
  - Biosafety level: 1
  - Biosafety level comment: Risk group (German classification)

16S sequences:
- 0:
  - @ref: 20218
  - Description: Streptomyces griseofuscus strain IFO 12870 clone ITS25 16S-23S ribosomal RNA intergenic spacer, partial sequence
  - Accession: AY296915
  - Length: 247
  - Database: nuccore
  - NCBI tax ID: 146922
- 1:
  - @ref: 20218
  - Description: Streptomyces griseofuscus strain IFO 12870 clone ITS8 16S-23S ribosomal RNA intergenic spacer, partial sequence
  - Accession: AY296916
  - Length: 265
  - Database: nuccore
  - NCBI tax ID: 146922
- 2:
  - @ref: 20218
  - Description: Streptomyces griseofuscus strain IFO 12870 clone ITS9 16S-23S ribosomal RNA intergenic spacer, partial sequence
  - Accession: AY296917
  - Length: 280
  - Database: nuccore
  - NCBI tax ID: 146922
- 3:
  - @ref: 20218
  - Description: Streptomyces rochei gene for 16S ribosomal RNA, partial sequence, strain: JCM 4276
  - Accession: D44041
  - Length: 120
  - Database: nuccore
  - NCBI tax ID: 1928
- 4:
  - @ref: 20218
  - Description: Streptomyces griseofuscus 16S ribosomal RNA gene, partial sequence
  - Accession: AY207605
  - Length: 1491
  - Database: nuccore
  - NCBI tax ID: 146922
- 5:
  - @ref: 20218
  - Description: Streptomyces griseofuscus strain KCTC 9879 16S ribosomal RNA gene, partial sequence
  - Accession: AY999809
  - Length: 1419
  - Database: nuccore
  - NCBI tax ID: 146922
- 6:
  - @ref: 20218
  - Description: Streptomyces griseofuscus gene for 16S rRNA, partial sequence, strain: NBRC 12870
  - Accession: AB184206
  - Length: 1476
  - Database: nuccore
  - NCBI tax ID: 146922
Genome sequences:
- 0:
  - @ref: 66792
  - Description: Streptomyces griseofuscus DSM 40191
  - Accession: GCA_014673495
  - Assembly level: complete
  - Database: ncbi
  - NCBI tax ID: 146922
- 1:
  - @ref: 66792
  - Description: Streptomyces griseofuscus strain DSM 40191
  - Accession: 146922.15
  - Assembly level: complete
  - Database: patric
  - NCBI tax ID: 146922
- 2:
  - @ref: 67770
  - Description: Streptomyces griseofuscus NRRL B-5429
  - Accession: GCA_000718315
  - Assembly level: contig
  - Database: ncbi
  - NCBI tax ID: 146922
GC content:
- @ref: 67770
- GC-content: 71.7
- Method: genome sequence analysis

Lineage: cellular organisms; Bacteria; Terrabacteria group; Actinomycetota; Actinomycetes; Kitasatosporales; Streptomycetaceae; Streptomyces; Streptomyces rochei group
LineageEx:
- Taxon:
  - 0:
    - TaxId: 131567
    - ScientificName: cellular organisms
    - Rank: no rank
  - 1:
    - TaxId: 2
    - ScientificName: Bacteria
    - Rank: superkingdom
  - 2:
    - TaxId: 1783272
    - ScientificName: Terrabacteria group
    - Rank: clade
  - 3:
    - TaxId: 201174
    - ScientificName: Actinomycetota
    - Rank: phylum
  - 4:
    - TaxId: 1760
    - ScientificName: Actinomycetes
    - Rank: class
  - 5:
    - TaxId: 85011
    - ScientificName: Kitasatosporales
    - Rank: order
  - 6:
    - TaxId: 2062
    - ScientificName: Streptomycetaceae
    - Rank: family
  - 7:
    - TaxId: 1883
    - ScientificName: Streptomyces
    - Rank: genus
  - 8:
    - TaxId: 2867164
    - ScientificName: Streptomyces rochei group
    - Rank: species group

General Information

Sample Information

Other Information

General Information

Sample Information

Other Information

Occurence (geoference records)

Morphology

Culture and growth conditions

Physiology and metabolism

Isolation, sampling and environmental information

Safety information

Sequence information

Name and taxonomic classification